The 2.0 version of rSNPBase

Variant report

Variant rs10800130
Chromosome Location chr1:165653546-165653547
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165629000-165653600 Strong transcription Dnd41 blood
3 chr1:165629400-165654200 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr1:165629400-165656000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:165629600-165654800 Strong transcription Primary T cells fromperipheralblood blood
6 chr1:165629800-165654800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:165630000-165654400 Strong transcription Primary B cells from peripheral blood blood
8 chr1:165638000-165666800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:165638600-165665400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:165639200-165659800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:165643400-165654800 Weak transcription Right Atrium heart
12 chr1:165644800-165658800 Strong transcription HSMM muscle
13 chr1:165645000-165655000 Strong transcription Monocytes-CD14+_RO01746 blood
14 chr1:165645000-165660200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:165645200-165655200 Strong transcription Primary B cells from cord blood blood
16 chr1:165645800-165655000 Strong transcription Primary monocytes fromperipheralblood blood
17 chr1:165645800-165655400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:165645800-165657400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:165646000-165655200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:165646800-165654800 Weak transcription Right Ventricle heart
21 chr1:165647600-165653800 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr1:165647800-165658400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:165649200-165655000 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:165650000-165666800 Weak transcription Colonic Mucosa Colon
25 chr1:165651200-165653800 Strong transcription NHEK skin
26 chr1:165651600-165654400 Strong transcription GM12878-XiMat blood
27 chr1:165651600-165654800 Weak transcription Aorta Aorta
28 chr1:165651600-165659600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:165651600-165665400 Weak transcription Placenta Amnion Placenta Amnion
30 chr1:165651600-165667200 Weak transcription Gastric stomach
31 chr1:165651800-165653800 Weak transcription Primary hematopoietic stem cells blood
32 chr1:165651800-165654600 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr1:165651800-165665200 Weak transcription Brain Substantia Nigra brain
34 chr1:165651800-165665200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:165651800-165665400 Weak transcription Small Intestine intestine
36 chr1:165652000-165655600 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:165652000-165664000 Weak transcription Fetal Brain Male brain
38 chr1:165652200-165655400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr1:165652200-165655400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:165652200-165656000 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:165652200-165657000 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr1:165652200-165657400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr1:165652200-165665400 Weak transcription Colon Smooth Muscle Colon
44 chr1:165652200-165665800 Weak transcription Brain Cingulate Gyrus brain
45 chr1:165652200-165666000 Weak transcription Fetal Kidney kidney
46 chr1:165652200-165666800 Weak transcription Lung lung
47 chr1:165652400-165653800 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr1:165652400-165654400 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr1:165652400-165654400 Weak transcription Psoas Muscle Psoas
50 chr1:165652400-165654400 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015