Variant report

Variant	rs35247362
Chromosome Location	chr1:165653034-165653035
allele	AA/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165639297..165642601-chr1:165650808..165654690,4	K562	blood:
2	chr1:165639297..165643636-chr1:165650808..165655625,4	K562	blood:

Variant related genes	Relation type
ENSG00000230175	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10753687	0.89[EUR][1000 genomes]
rs10800128	0.94[EUR][1000 genomes]
rs10800129	0.94[EUR][1000 genomes]
rs10800130	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10800131	0.89[EUR][1000 genomes]
rs10918241	0.93[EUR][1000 genomes]
rs10918244	0.89[EUR][1000 genomes]
rs1143659	0.94[EUR][1000 genomes]
rs12565874	0.94[EUR][1000 genomes]
rs1337442	0.94[EUR][1000 genomes]
rs1337443	0.94[EUR][1000 genomes]
rs1538115	0.89[EUR][1000 genomes]
rs1913844	0.94[EUR][1000 genomes]
rs1970286	0.81[EUR][1000 genomes]
rs2348734	0.89[EUR][1000 genomes]
rs2882006	0.94[EUR][1000 genomes]
rs3738192	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3845537	0.94[EUR][1000 genomes]
rs4233407	0.94[EUR][1000 genomes]
rs4646886	0.89[EUR][1000 genomes]
rs4646887	0.90[EUR][1000 genomes]
rs4646888	0.91[EUR][1000 genomes]
rs4646889	0.92[EUR][1000 genomes]
rs4646891	0.94[EUR][1000 genomes]
rs4656457	0.94[EUR][1000 genomes]
rs7368130	0.89[EUR][1000 genomes]
rs7519162	0.89[EUR][1000 genomes]
rs7543204	0.91[EUR][1000 genomes]
rs7546084	0.88[EUR][1000 genomes]
rs7555268	0.90[EUR][1000 genomes]
rs7555787	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:165629000-165653600	Strong transcription	Dnd41	blood
4	chr1:165629400-165654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:165629400-165656000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:165629600-165654800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr1:165629800-165654800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:165630000-165654400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr1:165637800-165653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:165638000-165666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:165638600-165665400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:165639200-165659800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:165643400-165654800	Weak transcription	Right Atrium	heart
14	chr1:165644400-165653400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr1:165644600-165653400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:165644800-165653400	Strong transcription	Placenta	Placenta
17	chr1:165644800-165658800	Strong transcription	HSMM	muscle
18	chr1:165645000-165655000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr1:165645000-165660200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:165645200-165653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:165645200-165655200	Strong transcription	Primary B cells from cord blood	blood
22	chr1:165645800-165655000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr1:165645800-165655400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:165645800-165657400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:165646000-165653400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:165646000-165655200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:165646800-165654800	Weak transcription	Right Ventricle	heart
28	chr1:165647600-165653800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr1:165647800-165658400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:165648200-165653400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:165648600-165653400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:165649200-165655000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:165650000-165666800	Weak transcription	Colonic Mucosa	Colon
34	chr1:165650600-165653200	Strong transcription	Brain Germinal Matrix	brain
35	chr1:165651000-165653200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:165651200-165653800	Strong transcription	NHEK	skin
37	chr1:165651600-165654400	Strong transcription	GM12878-XiMat	blood
38	chr1:165651600-165654800	Weak transcription	Aorta	Aorta
39	chr1:165651600-165659600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:165651600-165665400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:165651600-165667200	Weak transcription	Gastric	stomach
42	chr1:165651800-165653800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr1:165651800-165654600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr1:165651800-165665200	Weak transcription	Brain Substantia Nigra	brain
45	chr1:165651800-165665200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:165651800-165665400	Weak transcription	Small Intestine	intestine
47	chr1:165652000-165655600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:165652000-165664000	Weak transcription	Fetal Brain Male	brain
49	chr1:165652200-165653200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:165652200-165653400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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