The 2.0 version of rSNPBase

Variant report

Variant rs7543204
Chromosome Location chr1:165655162-165655163
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165629400-165656000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:165638000-165666800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:165638600-165665400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:165639200-165659800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:165644800-165658800 Strong transcription HSMM muscle
7 chr1:165645000-165660200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:165645200-165655200 Strong transcription Primary B cells from cord blood blood
9 chr1:165645800-165655400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr1:165645800-165657400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:165646000-165655200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:165647800-165658400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:165650000-165666800 Weak transcription Colonic Mucosa Colon
14 chr1:165651600-165659600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:165651600-165665400 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:165651600-165667200 Weak transcription Gastric stomach
17 chr1:165651800-165665200 Weak transcription Brain Substantia Nigra brain
18 chr1:165651800-165665200 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:165651800-165665400 Weak transcription Small Intestine intestine
20 chr1:165652000-165655600 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr1:165652000-165664000 Weak transcription Fetal Brain Male brain
22 chr1:165652200-165655400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:165652200-165655400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:165652200-165656000 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:165652200-165657000 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr1:165652200-165657400 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr1:165652200-165665400 Weak transcription Colon Smooth Muscle Colon
28 chr1:165652200-165665800 Weak transcription Brain Cingulate Gyrus brain
29 chr1:165652200-165666000 Weak transcription Fetal Kidney kidney
30 chr1:165652200-165666800 Weak transcription Lung lung
31 chr1:165652400-165655200 Weak transcription Left Ventricle heart
32 chr1:165652400-165655600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:165652400-165655600 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:165652400-165655800 Weak transcription A549 lung
35 chr1:165652400-165656400 Weak transcription Fetal Brain Female brain
36 chr1:165652400-165657200 Weak transcription Duodenum Mucosa Duodenum
37 chr1:165652400-165657200 Weak transcription HepG2 liver
38 chr1:165652400-165657400 Weak transcription HUVEC blood vessel
39 chr1:165652400-165658800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:165652400-165659200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:165652400-165659400 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr1:165652400-165659600 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:165652400-165659600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:165652400-165659600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:165652400-165659600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:165652400-165659800 Weak transcription Brain Angular Gyrus brain
47 chr1:165652400-165665200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr1:165652400-165665400 Weak transcription HMEC breast
49 chr1:165652400-165665400 Weak transcription NH-A brain
50 chr1:165652400-165665800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015