The 2.0 version of rSNPBase

Variant report

Variant rs7519162
Chromosome Location chr1:165657810-165657811
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165638000-165666800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:165638600-165665400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:165639200-165659800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:165644800-165658800 Strong transcription HSMM muscle
6 chr1:165645000-165660200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:165647800-165658400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:165650000-165666800 Weak transcription Colonic Mucosa Colon
9 chr1:165651600-165659600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr1:165651600-165665400 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:165651600-165667200 Weak transcription Gastric stomach
12 chr1:165651800-165665200 Weak transcription Brain Substantia Nigra brain
13 chr1:165651800-165665200 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:165651800-165665400 Weak transcription Small Intestine intestine
15 chr1:165652000-165664000 Weak transcription Fetal Brain Male brain
16 chr1:165652200-165665400 Weak transcription Colon Smooth Muscle Colon
17 chr1:165652200-165665800 Weak transcription Brain Cingulate Gyrus brain
18 chr1:165652200-165666000 Weak transcription Fetal Kidney kidney
19 chr1:165652200-165666800 Weak transcription Lung lung
20 chr1:165652400-165658800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:165652400-165659200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:165652400-165659400 Weak transcription HUES48 Cell Line embryonic stem cell
23 chr1:165652400-165659600 Weak transcription H1 Cell Line embryonic stem cell
24 chr1:165652400-165659600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:165652400-165659600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:165652400-165659600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:165652400-165659800 Weak transcription Brain Angular Gyrus brain
28 chr1:165652400-165665200 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:165652400-165665400 Weak transcription HMEC breast
30 chr1:165652400-165665400 Weak transcription NH-A brain
31 chr1:165652400-165665800 Weak transcription Rectal Smooth Muscle rectum
32 chr1:165652400-165665800 Weak transcription Stomach Smooth Muscle stomach
33 chr1:165652400-165665800 Weak transcription HSMMtube muscle
34 chr1:165652400-165666800 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:165652400-165666800 Weak transcription Esophagus oesophagus
36 chr1:165652400-165667000 Weak transcription Pancreas Pancrea
37 chr1:165652400-165667000 Weak transcription Spleen Spleen
38 chr1:165652600-165666000 Weak transcription Brain Hippocampus Middle brain
39 chr1:165652800-165665400 Weak transcription NHLF lung
40 chr1:165652800-165666200 Weak transcription Brain Inferior Temporal Lobe brain
41 chr1:165653000-165666000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:165653400-165658800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
43 chr1:165653400-165659800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr1:165653800-165659800 Weak transcription Brain Germinal Matrix brain
45 chr1:165653800-165665200 Weak transcription NHEK skin
46 chr1:165653800-165666000 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:165654000-165659600 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:165654000-165660000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:165654000-165661400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:165654400-165658200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015