Variant report

Variant	rs10806630
Chromosome Location	chr6:70929522-70929523
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10755539	0.95[GIH][hapmap]
rs10945202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10945205	0.86[ASN][1000 genomes]
rs10945206	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11760185	1.00[AFR][1000 genomes]
rs12153902	0.82[ASN][1000 genomes]
rs12154117	0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12191701	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12191702	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12192237	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12195968	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12201626	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12204438	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12209857	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12210719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12210870	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12211880	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12213613	0.82[ASN][1000 genomes]
rs1464159	1.00[ASN][1000 genomes]
rs16868507	0.83[CHD][hapmap]
rs17712300	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2176356	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2346211	0.81[ASN][1000 genomes]
rs45464198	0.86[ASN][1000 genomes]
rs4707627	0.83[CHD][hapmap]
rs510423	1.00[JPT][hapmap]
rs55836703	1.00[AFR][1000 genomes]
rs59322080	0.82[ASN][1000 genomes]
rs6922941	0.82[ASN][1000 genomes]
rs6923114	0.86[ASN][1000 genomes]
rs6932776	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs72923164	0.86[ASN][1000 genomes]
rs72923166	0.86[ASN][1000 genomes]
rs7741471	0.91[ASN][1000 genomes]
rs7759110	0.82[ASN][1000 genomes]
rs9354910	1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70918600-70930800	Weak transcription	Primary B cells from peripheral blood	blood

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