Variant report

Variant	rs72923164
Chromosome Location	chr6:70960991-70960992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10806630	0.86[ASN][1000 genomes]
rs10806631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10806632	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10945202	0.86[ASN][1000 genomes]
rs10945205	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10945206	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945209	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10945210	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11757395	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153874	0.88[ASN][1000 genomes]
rs12153902	0.95[ASN][1000 genomes]
rs12154117	1.00[ASN][1000 genomes]
rs12189655	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12191701	0.95[ASN][1000 genomes]
rs12191702	0.86[ASN][1000 genomes]
rs12192237	0.86[ASN][1000 genomes]
rs12193867	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12195310	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12195966	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12195968	0.95[ASN][1000 genomes]
rs12196905	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12201626	0.86[ASN][1000 genomes]
rs12205998	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12209857	0.95[ASN][1000 genomes]
rs12210719	0.86[ASN][1000 genomes]
rs12210870	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211880	0.86[ASN][1000 genomes]
rs12213613	0.95[ASN][1000 genomes]
rs1321059	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1464159	0.86[ASN][1000 genomes]
rs1711729	0.91[ASN][1000 genomes]
rs17581483	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2176356	0.95[ASN][1000 genomes]
rs2274584	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274586	0.88[EUR][1000 genomes]
rs45464198	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs510423	0.91[ASN][1000 genomes]
rs55860958	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59322080	0.95[ASN][1000 genomes]
rs6922941	0.95[ASN][1000 genomes]
rs6923114	1.00[ASN][1000 genomes]
rs6932776	0.95[ASN][1000 genomes]
rs72923166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72924908	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7741471	0.87[ASN][1000 genomes]
rs7759110	0.95[ASN][1000 genomes]
rs9354910	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9354911	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70952200-70964600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70952200-70980400	Weak transcription	Fetal Stomach	stomach
4	chr6:70952200-70990000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:70952600-70966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:70952600-70980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:70952800-70989800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:70955200-70971000	Weak transcription	Fetal Kidney	kidney
9	chr6:70960800-70962000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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