Variant report

Variant	rs6932776
Chromosome Location	chr6:70945453-70945454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70935787..70939649-chr6:70943488..70947282,5	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10806630	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10945202	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10945205	0.95[ASN][1000 genomes]
rs10945206	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs113979	0.81[CEU][hapmap]
rs11757395	0.84[ASN][1000 genomes]
rs1200579	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1200580	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs12153874	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12153902	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154117	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12191701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191702	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12192237	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12195968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201626	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12204438	1.00[JPT][hapmap]
rs12209857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210719	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12210870	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12211880	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12213613	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464159	0.82[ASN][1000 genomes]
rs1711729	0.96[ASN][1000 genomes]
rs2024730	0.81[CEU][hapmap]
rs2176356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182999	0.96[EUR][1000 genomes]
rs45464198	0.95[ASN][1000 genomes]
rs500457	0.82[CEU][hapmap]
rs507676	0.80[CEU][hapmap]
rs510423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs516166	0.90[EUR][1000 genomes]
rs519068	0.80[CEU][hapmap]
rs538588	0.90[EUR][1000 genomes]
rs544179	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs59322080	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657572	0.90[EUR][1000 genomes]
rs6919444	0.95[EUR][1000 genomes]
rs6922941	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923114	0.95[ASN][1000 genomes]
rs701686	0.81[CEU][hapmap]
rs701693	0.84[CEU][hapmap]
rs72923164	0.95[ASN][1000 genomes]
rs72923166	0.95[ASN][1000 genomes]
rs7741471	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7759110	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354910	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70933600-70947800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:70939000-70951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:70943000-70946400	Weak transcription	Fetal Brain Male	brain
8	chr6:70944200-70947000	Enhancers	Fetal Stomach	stomach

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