Variant report

Variant	rs7741471
Chromosome Location	chr6:70934856-70934857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10806630	0.91[ASN][1000 genomes]
rs10945202	0.91[ASN][1000 genomes]
rs10945205	0.87[ASN][1000 genomes]
rs10945206	0.87[ASN][1000 genomes]
rs1200579	0.86[EUR][1000 genomes]
rs1200580	0.86[EUR][1000 genomes]
rs12153874	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12153902	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12154117	0.87[ASN][1000 genomes]
rs12191701	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191702	0.91[ASN][1000 genomes]
rs12192237	0.91[ASN][1000 genomes]
rs12195968	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12201626	0.91[ASN][1000 genomes]
rs12209857	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12210719	0.91[ASN][1000 genomes]
rs12210870	0.83[ASN][1000 genomes]
rs12211880	0.91[ASN][1000 genomes]
rs12213613	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1464159	0.91[ASN][1000 genomes]
rs1711729	0.87[ASN][1000 genomes]
rs2176356	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2182999	0.91[EUR][1000 genomes]
rs45464198	0.87[ASN][1000 genomes]
rs510423	0.87[ASN][1000 genomes]
rs516166	0.87[EUR][1000 genomes]
rs538588	0.96[EUR][1000 genomes]
rs544179	0.91[EUR][1000 genomes]
rs59322080	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657572	0.87[EUR][1000 genomes]
rs6919444	0.92[EUR][1000 genomes]
rs6922941	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6923114	0.87[ASN][1000 genomes]
rs6932776	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72923164	0.87[ASN][1000 genomes]
rs72923166	0.87[ASN][1000 genomes]
rs7759110	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9354910	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932400-70938000	Weak transcription	Fetal Brain Female	brain
3	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:70933600-70947800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:70934400-70935600	Enhancers	Brain Hippocampus Middle	brain
7	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:70934800-70935000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:70934800-70935000	Enhancers	Gastric	stomach
10	chr6:70934800-70935200	Enhancers	Brain Angular Gyrus	brain
11	chr6:70934800-70935200	Enhancers	Brain Substantia Nigra	brain

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