Variant report

Variant	rs10817394
Chromosome Location	chr9:115603613-115603614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10117017	0.86[JPT][hapmap]
rs10732374	0.86[JPT][hapmap]
rs10733595	0.86[JPT][hapmap]
rs10739371	0.86[JPT][hapmap]
rs10759584	0.87[ASN][1000 genomes]
rs10759587	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs10817380	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10817381	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10817383	1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817385	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10817387	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10817393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981497	1.00[EUR][1000 genomes]
rs10981500	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981501	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10981506	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981510	0.93[ASN][1000 genomes]
rs10981512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10981513	0.86[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981519	0.86[JPT][hapmap]
rs10981520	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981522	0.82[JPT][hapmap]
rs10981523	0.86[JPT][hapmap]
rs10981524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11790110	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11792606	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11794186	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12235123	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12685108	1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1361719	0.84[ASN][1000 genomes]
rs1361720	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1418408	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs1539345	0.82[AFR][1000 genomes]
rs1891403	1.00[JPT][hapmap]
rs2185767	0.86[JPT][hapmap]
rs2645993	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28494060	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4276760	0.86[JPT][hapmap]
rs4979148	0.87[ASN][1000 genomes]
rs4979150	0.87[ASN][1000 genomes]
rs4979153	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs4979156	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4979163	0.86[JPT][hapmap]
rs59721032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856199	0.86[JPT][hapmap]
rs7859381	0.87[ASN][1000 genomes]
rs7863952	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7868830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7872308	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs787269	0.87[ASN][1000 genomes]
rs787270	0.87[ASN][1000 genomes]
rs787271	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787272	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787274	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787275	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787276	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787279	0.84[ASN][1000 genomes]
rs787280	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs787283	0.82[YRI][hapmap]
rs787284	1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs787295	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs787297	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs787298	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs787301	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7873644	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs813101	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9299210	0.82[AFR][1000 genomes]
rs9409123	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs999018	0.83[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2757351	chr9:115600623-115632898	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115570600-115608400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:115573600-115607800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:115577600-115630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:115580200-115608400	Weak transcription	Fetal Kidney	kidney
5	chr9:115582200-115608600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:115582400-115608600	Weak transcription	NHLF	lung
7	chr9:115582400-115609000	Weak transcription	NHDF-Ad	bronchial
8	chr9:115582400-115630000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:115584400-115608800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:115591200-115606800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:115591400-115623200	Weak transcription	Fetal Heart	heart
12	chr9:115592600-115607200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:115593200-115611000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:115593600-115607200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:115594200-115607200	Weak transcription	Fetal Thymus	thymus
16	chr9:115594200-115610800	Weak transcription	Esophagus	oesophagus
17	chr9:115594200-115616000	Weak transcription	Small Intestine	intestine
18	chr9:115594200-115620400	Weak transcription	Thymus	Thymus
19	chr9:115594200-115634400	Weak transcription	NH-A	brain
20	chr9:115594400-115608600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:115594400-115626800	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:115594600-115607200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:115594600-115607200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:115596200-115604000	Strong transcription	Fetal Stomach	stomach
25	chr9:115596400-115613600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:115597400-115605600	Strong transcription	Primary T cells from cord blood	blood
27	chr9:115598000-115605000	Strong transcription	Fetal Muscle Leg	muscle
28	chr9:115598400-115604800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr9:115598600-115615200	Weak transcription	Psoas Muscle	Psoas
30	chr9:115598800-115608400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:115598800-115608800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:115598800-115610600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:115598800-115613200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:115599000-115606800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:115599000-115607200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:115599000-115607800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:115599000-115623200	Weak transcription	Right Ventricle	heart
38	chr9:115599200-115607200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:115599400-115603800	Weak transcription	Brain Angular Gyrus	brain
40	chr9:115599400-115603800	Weak transcription	Lung	lung
41	chr9:115599400-115608800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:115599400-115609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:115599400-115610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:115599400-115612000	Weak transcription	Pancreas	Pancrea
45	chr9:115599400-115612800	Weak transcription	Placenta	Placenta
46	chr9:115599400-115613000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:115599400-115615200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:115599400-115623600	Weak transcription	Right Atrium	heart
49	chr9:115599400-115625200	Weak transcription	Colonic Mucosa	Colon
50	chr9:115600400-115603800	Strong transcription	Adipose Nuclei	Adipose

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