Variant report

Variant	rs7856199
Chromosome Location	chr9:115574018-115574019
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:115568138..115570765-chr9:115571944..115575616,3	MCF-7	breast:
2	chr9:115554429..115557322-chr9:115571170..115574854,4	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10115576	0.81[GIH][hapmap]
rs10117017	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124939	0.81[GIH][hapmap]
rs10481638	0.93[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10481671	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs10732374	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10733595	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733596	0.93[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10733597	0.93[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10739371	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739375	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759589	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10759591	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759592	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759593	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs10759596	0.93[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759597	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759598	0.93[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10759599	0.93[CEU][hapmap]
rs10759600	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10759601	0.93[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10817391	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10817392	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10817393	0.84[JPT][hapmap]
rs10817394	0.86[JPT][hapmap]
rs10817395	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10817396	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817397	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10817398	0.93[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs10817399	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10817400	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10817401	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10817402	0.81[CEU][hapmap]
rs10981513	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10981515	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10981516	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10981519	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10981520	0.84[JPT][hapmap]
rs10981521	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10981522	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10981523	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11791125	0.94[ASN][1000 genomes]
rs11793016	0.94[ASN][1000 genomes]
rs1418408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475292	0.93[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1475293	0.81[GIH][hapmap]
rs1539340	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1539341	0.87[GIH][hapmap];0.80[ASN][1000 genomes]
rs1539342	0.93[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1539345	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1891403	0.81[GIH][hapmap]
rs1970527	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1970528	0.93[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2000204	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2051017	0.80[CEU][hapmap]
rs2096186	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2096187	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2153839	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs2185767	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2645988	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2676622	0.80[CEU][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs2796024	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2798315	0.80[CEU][hapmap]
rs4276760	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4366151	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4367629	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4978504	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4978511	0.81[GIH][hapmap]
rs4979158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979162	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979163	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979166	0.93[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.88[ASN][1000 genomes]
rs4979167	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4979168	0.93[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57546880	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57672123	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59645636	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60989307	0.94[ASN][1000 genomes]
rs61626147	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6477960	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6477961	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7030460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032401	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7032763	0.81[CEU][hapmap]
rs7039715	0.89[AFR][1000 genomes]
rs7871799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787271	0.81[GIH][hapmap]
rs787274	0.81[GIH][hapmap]
rs787280	0.81[GIH][hapmap]
rs787282	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs787283	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs787288	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs787295	0.81[GIH][hapmap]
rs787297	0.81[GIH][hapmap]
rs7873644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870078	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs912661	0.81[CEU][hapmap];0.80[ASN][1000 genomes]
rs9299210	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299211	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9299212	0.93[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs999018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv515899	chr9:115359049-115593870	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv34346	chr9:115360505-115581453	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1038999	chr9:115367078-115590950	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv2757350	chr9:115371397-115594108	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv2761275	chr9:115376461-115590962	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1049451	chr9:115378282-115585109	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1047374	chr9:115378282-115590950	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1038306	chr9:115379305-115595695	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv540194	chr9:115379305-115595695	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1051909	chr9:115379505-115588377	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv540195	chr9:115379505-115588377	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv915763	chr9:115379600-115588349	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	esv3693040	chr9:115381164-115578065	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv515121	chr9:115383227-115585827	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	nsv1044168	chr9:115383253-115585109	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
18	nsv1048327	chr9:115383253-115589646	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv1044381	chr9:115383253-115590950	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv442163	chr9:115383255-115590578	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
21	esv34763	chr9:115383332-115581453	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv430090	chr9:115383445-115594445	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv1041424	chr9:115389428-115590950	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv1047625	chr9:115390759-115587347	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv540196	chr9:115390759-115587347	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv615198	chr9:115397206-115589251	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
28	nsv1051808	chr9:115397891-115590950	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	esv34739	chr9:115409445-115581453	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
30	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7856199	KIAA1958	cis	lymphoblastoid	seeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115549800-115593600	Weak transcription	Thymus	Thymus
2	chr9:115552000-115580200	Weak transcription	Fetal Stomach	stomach
3	chr9:115552800-115593800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:115553000-115582000	Weak transcription	Esophagus	oesophagus
5	chr9:115553600-115579400	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:115555800-115581800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:115555800-115582000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:115555800-115582000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:115555800-115597400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:115556200-115580600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:115558200-115579200	Weak transcription	Osteobl	bone
12	chr9:115558800-115581800	Weak transcription	Aorta	Aorta
13	chr9:115559000-115580000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:115559400-115581800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:115559400-115598400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:115559600-115593800	Weak transcription	Brain Germinal Matrix	brain
17	chr9:115563200-115580600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:115564600-115593600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:115565000-115600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:115565600-115579400	Weak transcription	Liver	Liver
21	chr9:115565600-115600800	Weak transcription	HMEC	breast
22	chr9:115565800-115580400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:115566800-115598000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:115567000-115580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:115567000-115580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:115567400-115579000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:115567400-115581200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:115567400-115586200	Weak transcription	Colonic Mucosa	Colon
29	chr9:115568600-115578600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:115569200-115578600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:115569400-115580000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr9:115569600-115593800	Weak transcription	Fetal Brain Female	brain
33	chr9:115570400-115580000	Weak transcription	Fetal Intestine Large	intestine
34	chr9:115570400-115581000	Weak transcription	Primary T cells from cord blood	blood
35	chr9:115570400-115583400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:115570600-115580400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:115570600-115584800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:115570600-115608400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr9:115570800-115578600	Weak transcription	Ovary	ovary
40	chr9:115570800-115579200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:115570800-115580000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:115570800-115580600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr9:115570800-115593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:115571000-115579200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:115571000-115580400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr9:115571800-115574400	Enhancers	Brain Angular Gyrus	brain
47	chr9:115571800-115574400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr9:115572000-115574400	Enhancers	Brain Cingulate Gyrus	brain
49	chr9:115572200-115574400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:115572400-115574400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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