Variant report

Variant	rs10981522
Chromosome Location	chr9:115601252-115601253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10117017	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10117709	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10122712	0.84[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10513169	0.93[EUR][1000 genomes]
rs10732374	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10733595	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10739371	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10759587	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10759588	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10817380	1.00[JPT][hapmap]
rs10817381	0.82[JPT][hapmap]
rs10817383	0.82[JPT][hapmap]
rs10817388	1.00[JPT][hapmap]
rs10817390	0.82[JPT][hapmap]
rs10817391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817393	0.82[JPT][hapmap]
rs10817394	0.82[JPT][hapmap]
rs10817395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817396	0.84[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10981501	1.00[JPT][hapmap]
rs10981512	0.82[JPT][hapmap]
rs10981513	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981515	0.91[ASN][1000 genomes]
rs10981516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981519	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981520	0.82[JPT][hapmap]
rs10981521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981523	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981524	1.00[JPT][hapmap]
rs10981525	0.82[JPT][hapmap]
rs10981527	0.82[JPT][hapmap]
rs10981530	0.86[EUR][1000 genomes]
rs10981531	0.86[EUR][1000 genomes]
rs10981532	0.81[EUR][1000 genomes]
rs10981533	0.81[EUR][1000 genomes]
rs11791125	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792606	0.82[JPT][hapmap]
rs11793016	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794186	0.82[JPT][hapmap]
rs12685108	0.82[JPT][hapmap]
rs1361720	0.82[JPT][hapmap]
rs1418408	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1539345	0.99[ASN][1000 genomes]
rs1573055	0.92[EUR][1000 genomes]
rs1573056	0.93[EUR][1000 genomes]
rs17742501	0.86[EUR][1000 genomes]
rs17742994	0.86[EUR][1000 genomes]
rs17743418	0.93[EUR][1000 genomes]
rs17743824	0.96[EUR][1000 genomes]
rs17821593	0.86[EUR][1000 genomes]
rs1891403	1.00[JPT][hapmap]
rs2000204	0.89[ASN][1000 genomes]
rs2096186	0.84[ASN][1000 genomes]
rs2096187	0.80[ASN][1000 genomes]
rs2153839	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2185767	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645993	0.82[JPT][hapmap]
rs2796024	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs41280189	0.96[EUR][1000 genomes]
rs4276760	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978504	0.90[ASN][1000 genomes]
rs4979153	0.82[JPT][hapmap]
rs4979158	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4979162	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4979163	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4979164	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4979166	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs57546880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57672123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58247585	0.96[EUR][1000 genomes]
rs59645636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60989307	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61626147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62576385	0.85[EUR][1000 genomes]
rs62576386	0.86[EUR][1000 genomes]
rs62576389	0.86[EUR][1000 genomes]
rs62576390	0.86[EUR][1000 genomes]
rs62576391	0.86[EUR][1000 genomes]
rs62576394	0.86[EUR][1000 genomes]
rs62576395	0.86[EUR][1000 genomes]
rs62576396	0.86[EUR][1000 genomes]
rs62576405	0.86[EUR][1000 genomes]
rs62576406	0.86[EUR][1000 genomes]
rs62576407	0.86[EUR][1000 genomes]
rs62576409	0.86[EUR][1000 genomes]
rs62576410	0.86[EUR][1000 genomes]
rs62576411	0.86[EUR][1000 genomes]
rs62576412	0.88[EUR][1000 genomes]
rs62576413	0.93[EUR][1000 genomes]
rs62576414	0.93[EUR][1000 genomes]
rs62576415	0.93[EUR][1000 genomes]
rs62576438	0.86[EUR][1000 genomes]
rs6477960	0.88[ASN][1000 genomes]
rs6477961	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7030460	0.91[ASN][1000 genomes]
rs7032401	0.89[ASN][1000 genomes]
rs7856199	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7863952	0.82[JPT][hapmap]
rs7868830	0.82[JPT][hapmap]
rs7871799	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs787271	1.00[JPT][hapmap]
rs787272	1.00[JPT][hapmap]
rs787274	1.00[JPT][hapmap]
rs787275	0.82[JPT][hapmap]
rs787276	0.82[JPT][hapmap]
rs787280	1.00[JPT][hapmap]
rs787282	0.87[ASN][1000 genomes]
rs787283	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787284	0.82[JPT][hapmap]
rs787288	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs787295	1.00[JPT][hapmap]
rs787297	1.00[JPT][hapmap]
rs787298	0.82[JPT][hapmap]
rs787301	1.00[JPT][hapmap]
rs7873644	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs813101	0.82[JPT][hapmap]
rs870078	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs883462	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299210	0.94[ASN][1000 genomes]
rs9409123	0.82[JPT][hapmap]
rs999018	0.84[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2757351	chr9:115600623-115632898	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115570600-115608400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:115573600-115607800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:115577600-115630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:115580200-115608400	Weak transcription	Fetal Kidney	kidney
5	chr9:115580600-115601800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:115582200-115608600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:115582400-115608600	Weak transcription	NHLF	lung
8	chr9:115582400-115609000	Weak transcription	NHDF-Ad	bronchial
9	chr9:115582400-115630000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:115584400-115608800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:115591200-115606800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:115591400-115623200	Weak transcription	Fetal Heart	heart
13	chr9:115592600-115607200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:115593200-115611000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:115593400-115602600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:115593600-115607200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:115594000-115602800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:115594200-115603000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:115594200-115607200	Weak transcription	Fetal Thymus	thymus
20	chr9:115594200-115610800	Weak transcription	Esophagus	oesophagus
21	chr9:115594200-115616000	Weak transcription	Small Intestine	intestine
22	chr9:115594200-115620400	Weak transcription	Thymus	Thymus
23	chr9:115594200-115634400	Weak transcription	NH-A	brain
24	chr9:115594400-115601400	Weak transcription	Fetal Brain Female	brain
25	chr9:115594400-115608600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:115594400-115626800	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:115594600-115607200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr9:115594600-115607200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:115595600-115602400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:115596200-115604000	Strong transcription	Fetal Stomach	stomach
31	chr9:115596400-115613600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:115597400-115605600	Strong transcription	Primary T cells from cord blood	blood
33	chr9:115598000-115605000	Strong transcription	Fetal Muscle Leg	muscle
34	chr9:115598200-115602400	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:115598200-115602600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:115598400-115601400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:115598400-115602400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:115598400-115602600	Strong transcription	Ovary	ovary
39	chr9:115598400-115602800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:115598400-115603400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:115598400-115604800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr9:115598600-115602000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:115598600-115602600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr9:115598600-115602600	Strong transcription	Osteobl	bone
45	chr9:115598600-115615200	Weak transcription	Psoas Muscle	Psoas
46	chr9:115598800-115608400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:115598800-115608800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:115598800-115610600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:115598800-115613200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:115599000-115601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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