Variant report
| Variant | rs10819772 |
|---|---|
| Chromosome Location | chr9:103168023-103168024 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:103166975..103169241-chr9:103188340..103190441,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000066697 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10819755 | 0.87[CEU][hapmap] |
| rs10819758 | 0.91[CEU][hapmap] |
| rs10819771 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10989046 | 0.82[CEU][hapmap] |
| rs10989047 | 0.91[CEU][hapmap] |
| rs10989051 | 0.91[CEU][hapmap] |
| rs10989072 | 0.91[CEU][hapmap] |
| rs10989073 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10989074 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10989075 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10989077 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11790431 | 0.82[CEU][hapmap] |
| rs12000794 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12002124 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12375859 | 0.82[EUR][1000 genomes] |
| rs12378432 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13284601 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs16919024 | 0.82[CEU][hapmap] |
| rs2039396 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2039397 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7027939 | 1.00[ASN][1000 genomes] |
| rs7029342 | 0.89[CEU][hapmap] |
| rs7039994 | 0.82[CEU][hapmap] |
| rs7849019 | 0.91[CEU][hapmap] |
| rs944942 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893623 | chr9:102648036-103405197 | Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv825012 | chr9:103152205-103256281 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
