Variant report

Variant	rs10819755
Chromosome Location	chr9:103063423-103063424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103056132..103059844-chr9:103061176..103064038,4	K562	blood:
2	chr9:103062847..103065404-chr9:103075501..103077702,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10819757	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819758	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10819760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819765	0.85[EUR][1000 genomes]
rs10819766	0.86[EUR][1000 genomes]
rs10819768	0.85[EUR][1000 genomes]
rs10819771	0.87[CEU][hapmap]
rs10819772	0.87[CEU][hapmap]
rs10989041	0.85[EUR][1000 genomes]
rs10989046	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10989047	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10989050	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10989051	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10989062	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10989063	0.85[EUR][1000 genomes]
rs10989068	0.86[EUR][1000 genomes]
rs10989069	0.86[EUR][1000 genomes]
rs10989072	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10989074	1.00[CEU][hapmap]
rs11515449	0.84[EUR][1000 genomes]
rs11515542	0.84[EUR][1000 genomes]
rs11788648	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11790431	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11791943	0.81[EUR][1000 genomes]
rs11795004	0.86[EUR][1000 genomes]
rs12000794	0.86[CEU][hapmap]
rs12002124	0.86[CEU][hapmap]
rs12003468	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs12005177	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12379480	0.80[EUR][1000 genomes]
rs16919024	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs3199998	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41274951	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41274961	0.86[EUR][1000 genomes]
rs7028101	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7029342	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7036972	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7037122	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7037419	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7039994	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs7849019	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7866700	0.83[EUR][1000 genomes]
rs7873560	0.86[EUR][1000 genomes]
rs7874036	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv999058	chr9:103063420-103063447	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044000-103067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:103044200-103071200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
4	chr9:103044800-103067800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr9:103046200-103072800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
9	chr9:103047400-103070800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:103048000-103068600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:103048000-103078000	Strong transcription	Primary T cells from cord blood	blood
12	chr9:103048200-103064600	Strong transcription	Adipose Nuclei	Adipose
13	chr9:103048200-103069600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:103048400-103068200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:103048400-103083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:103048600-103067600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:103049000-103073800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:103049400-103066800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr9:103049600-103065800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:103050000-103066400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:103050400-103065000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:103050600-103064800	Weak transcription	Psoas Muscle	Psoas
23	chr9:103050600-103067400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:103050600-103067400	Strong transcription	A549	lung
25	chr9:103050600-103069600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:103050600-103086400	Strong transcription	Dnd41	blood
27	chr9:103050800-103080400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:103051000-103068200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr9:103051000-103068400	Strong transcription	Fetal Muscle Leg	muscle
30	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:103051200-103066600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:103051200-103067800	Strong transcription	Fetal Stomach	stomach
33	chr9:103051200-103078000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:103051400-103068000	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:103051400-103074000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:103051800-103066200	Strong transcription	Primary B cells from cord blood	blood
37	chr9:103052000-103067800	Strong transcription	Fetal Lung	lung
38	chr9:103052000-103068000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:103052400-103063600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:103052600-103067400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:103052800-103063800	Strong transcription	Esophagus	oesophagus
42	chr9:103052800-103066400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:103053000-103066400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr9:103053000-103066800	Strong transcription	NHLF	lung
45	chr9:103053000-103067800	Strong transcription	Thymus	Thymus
46	chr9:103053000-103068200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:103053000-103068400	Strong transcription	GM12878-XiMat	blood
48	chr9:103053200-103067000	Strong transcription	Placenta	Placenta
49	chr9:103053400-103067800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:103053400-103074800	Strong transcription	Monocytes-CD14+_RO01746	blood

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