Variant report

Variant	rs7029342
Chromosome Location	chr9:103060918-103060919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103059248..103062054-chr9:103070984..103072739,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10819755	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10819757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10819758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819760	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819765	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819766	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819768	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819771	0.89[CEU][hapmap]
rs10819772	0.89[CEU][hapmap]
rs10989041	0.96[EUR][1000 genomes]
rs10989046	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs10989047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989063	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989068	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989069	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989074	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989077	1.00[ASN][1000 genomes]
rs11515449	0.94[EUR][1000 genomes]
rs11515542	0.94[EUR][1000 genomes]
rs11788648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790431	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs11791943	1.00[CHB][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793726	1.00[ASN][1000 genomes]
rs11794753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11795004	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000794	0.89[CEU][hapmap]
rs12002124	0.89[CEU][hapmap]
rs12003468	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs12005177	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375859	1.00[ASN][1000 genomes]
rs12379480	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919024	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs3199998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274951	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274961	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62579387	1.00[ASN][1000 genomes]
rs7028101	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037122	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037419	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039994	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs7849019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866700	0.94[EUR][1000 genomes]
rs7873560	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044000-103067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:103044200-103071200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
4	chr9:103044800-103067800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr9:103046200-103072800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
9	chr9:103047000-103061400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:103047200-103063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:103047400-103070800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:103048000-103068600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:103048000-103078000	Strong transcription	Primary T cells from cord blood	blood
14	chr9:103048200-103061000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr9:103048200-103061200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:103048200-103062600	Weak transcription	Small Intestine	intestine
17	chr9:103048200-103064600	Strong transcription	Adipose Nuclei	Adipose
18	chr9:103048200-103069600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:103048400-103068200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:103048400-103083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:103048600-103067600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:103049000-103073800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:103049400-103066800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr9:103049600-103065800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:103050000-103066400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:103050400-103065000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr9:103050600-103061200	Strong transcription	Ovary	ovary
28	chr9:103050600-103064800	Weak transcription	Psoas Muscle	Psoas
29	chr9:103050600-103067400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:103050600-103067400	Strong transcription	A549	lung
31	chr9:103050600-103069600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:103050600-103086400	Strong transcription	Dnd41	blood
33	chr9:103050800-103080400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr9:103051000-103068200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr9:103051000-103068400	Strong transcription	Fetal Muscle Leg	muscle
36	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:103051200-103066600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:103051200-103067800	Strong transcription	Fetal Stomach	stomach
39	chr9:103051200-103078000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr9:103051400-103068000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:103051400-103074000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:103051800-103066200	Strong transcription	Primary B cells from cord blood	blood
43	chr9:103052000-103067800	Strong transcription	Fetal Lung	lung
44	chr9:103052000-103068000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:103052400-103063600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:103052600-103067400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:103052800-103061000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:103052800-103063800	Strong transcription	Esophagus	oesophagus
49	chr9:103052800-103066400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:103053000-103061200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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