Variant report
| Variant | rs62579387 |
|---|---|
| Chromosome Location | chr9:103177590-103177591 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:103120038..103122956-chr9:103177426..103180015,2 | K562 | blood: | |
| 2 | chr9:103176909..103179543-chr9:103186659..103188308,2 | K562 | blood: | |
| 3 | chr9:103171653..103179256-chr9:103186952..103193020,13 | MCF-7 | breast: | |
| 4 | chr9:103174960..103177942-chr9:103180157..103183043,3 | K562 | blood: | |
| 5 | chr9:103115166..103116974-chr9:103176601..103179072,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000066697 | Chromatin interaction |
| ENSG00000136891 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10819758 | 1.00[ASN][1000 genomes] |
| rs10819760 | 1.00[ASN][1000 genomes] |
| rs10819765 | 1.00[ASN][1000 genomes] |
| rs10819766 | 1.00[ASN][1000 genomes] |
| rs10819768 | 1.00[ASN][1000 genomes] |
| rs10989047 | 1.00[ASN][1000 genomes] |
| rs10989050 | 1.00[ASN][1000 genomes] |
| rs10989051 | 1.00[ASN][1000 genomes] |
| rs10989062 | 1.00[ASN][1000 genomes] |
| rs10989063 | 1.00[ASN][1000 genomes] |
| rs10989068 | 1.00[ASN][1000 genomes] |
| rs10989069 | 1.00[ASN][1000 genomes] |
| rs10989072 | 1.00[ASN][1000 genomes] |
| rs10989077 | 1.00[ASN][1000 genomes] |
| rs11788648 | 1.00[ASN][1000 genomes] |
| rs11791943 | 1.00[ASN][1000 genomes] |
| rs11793726 | 1.00[ASN][1000 genomes] |
| rs11794753 | 1.00[ASN][1000 genomes] |
| rs11795004 | 1.00[ASN][1000 genomes] |
| rs12005177 | 1.00[ASN][1000 genomes] |
| rs12339558 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12352336 | 1.00[ASN][1000 genomes] |
| rs12375859 | 1.00[ASN][1000 genomes] |
| rs12379480 | 1.00[ASN][1000 genomes] |
| rs3199998 | 1.00[ASN][1000 genomes] |
| rs41274951 | 1.00[ASN][1000 genomes] |
| rs41274961 | 1.00[ASN][1000 genomes] |
| rs7028101 | 1.00[ASN][1000 genomes] |
| rs7029342 | 1.00[ASN][1000 genomes] |
| rs7036972 | 1.00[ASN][1000 genomes] |
| rs7037122 | 1.00[ASN][1000 genomes] |
| rs7037419 | 1.00[ASN][1000 genomes] |
| rs7849019 | 1.00[ASN][1000 genomes] |
| rs7873560 | 1.00[ASN][1000 genomes] |
| rs7874036 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893623 | chr9:102648036-103405197 | Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv825012 | chr9:103152205-103256281 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:103174600-103188800 | Weak transcription | Esophagus | oesophagus |
| 2 | chr9:103174800-103177600 | Weak transcription | Rectal Smooth Muscle | rectum |
| 3 | chr9:103176800-103188000 | Weak transcription | K562 | blood |
