Variant report

Variant	rs10819760
Chromosome Location	chr9:103092607-103092608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103092319..103094563-chr9:103099317..103101816,2	MCF-7	breast:
2	chr9:103087811..103094429-chr9:103096062..103101866,9	K562	blood:
3	chr9:103090943..103094053-chr9:103097968..103101444,3	MCF-7	breast:
4	chr9:103087241..103090159-chr9:103090884..103093840,2	MCF-7	breast:
5	chr9:103079486..103081674-chr9:103092591..103094628,2	K562	blood:
6	chr9:103085724..103088717-chr9:103090423..103093250,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10819755	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819765	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819766	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819768	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819771	0.91[CEU][hapmap]
rs10819772	0.91[CEU][hapmap]
rs10989041	0.97[EUR][1000 genomes]
rs10989046	0.91[CEU][hapmap];0.97[EUR][1000 genomes]
rs10989047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989050	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989051	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989062	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989063	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989068	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989069	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989072	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989074	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989077	1.00[ASN][1000 genomes]
rs11515449	0.96[EUR][1000 genomes]
rs11515542	0.96[EUR][1000 genomes]
rs11788648	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790431	0.91[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs11791637	0.83[EUR][1000 genomes]
rs11791943	1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793726	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11795004	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000794	0.91[CEU][hapmap];0.90[GIH][hapmap]
rs12002124	0.91[CEU][hapmap];0.90[GIH][hapmap]
rs12003468	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs12005177	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352336	1.00[ASN][1000 genomes]
rs12375859	1.00[ASN][1000 genomes]
rs12379480	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284601	0.82[GIH][hapmap]
rs16919024	0.91[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs3199998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274951	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274961	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62579387	1.00[ASN][1000 genomes]
rs7028101	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036972	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039994	0.91[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs7849019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866700	0.81[CEU][hapmap];0.95[EUR][1000 genomes]
rs7873560	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874036	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
2	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
4	chr9:103063800-103093400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
6	chr9:103064000-103100000	Weak transcription	Colonic Mucosa	Colon
7	chr9:103064200-103093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
9	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:103066200-103100400	Weak transcription	Aorta	Aorta
11	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
12	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
13	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
15	chr9:103068200-103094000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:103069200-103095400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:103069400-103094800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:103070000-103093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:103076600-103097000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:103078400-103100200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:103078600-103109000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:103079000-103093000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:103079000-103103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr9:103079200-103097000	Weak transcription	Thymus	Thymus
29	chr9:103079800-103107600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:103080000-103108400	Weak transcription	HSMMtube	muscle
31	chr9:103080800-103100400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:103081000-103104200	Weak transcription	Fetal Heart	heart
33	chr9:103081200-103100200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr9:103081200-103104600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:103081200-103107600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:103082200-103099800	Weak transcription	Fetal Stomach	stomach
37	chr9:103082800-103100200	Weak transcription	NHEK	skin
38	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr9:103083400-103093800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:103083400-103100200	Weak transcription	Left Ventricle	heart
41	chr9:103083800-103113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr9:103085800-103104400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:103086600-103107800	Weak transcription	NHLF	lung
44	chr9:103086800-103095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:103087200-103092800	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:103087400-103092800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:103087400-103093200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr9:103087400-103094800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr9:103087600-103092800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:103087600-103093200	Strong transcription	Dnd41	blood

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