Variant report

Variant	rs10819765
Chromosome Location	chr9:103120518-103120519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103118918..103120711-chr9:103139170..103141171,2	MCF-7	breast:
2	chr9:103120038..103122956-chr9:103177426..103180015,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10819755	0.85[EUR][1000 genomes]
rs10819757	0.92[EUR][1000 genomes]
rs10819758	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819760	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819766	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819768	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989041	0.89[EUR][1000 genomes]
rs10989046	0.89[EUR][1000 genomes]
rs10989047	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989050	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989051	1.00[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989062	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989063	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989069	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989072	1.00[CHB][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989074	1.00[CHB][hapmap]
rs10989077	1.00[ASN][1000 genomes]
rs11515449	0.88[EUR][1000 genomes]
rs11515542	0.88[EUR][1000 genomes]
rs11788648	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790431	0.89[EUR][1000 genomes]
rs11791637	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11791943	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793726	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11795004	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003468	0.89[EUR][1000 genomes]
rs12005177	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352336	1.00[ASN][1000 genomes]
rs12375859	1.00[ASN][1000 genomes]
rs12379480	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919024	0.89[EUR][1000 genomes]
rs3199998	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274951	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274961	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62579387	1.00[ASN][1000 genomes]
rs7028101	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029342	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036972	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037122	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037419	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039994	0.89[EUR][1000 genomes]
rs7849019	1.00[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866700	0.87[EUR][1000 genomes]
rs7873560	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874036	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103116200-103122400	Weak transcription	Fetal Heart	heart
2	chr9:103116200-103123400	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:103116200-103126000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:103116600-103120800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:103116600-103131000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:103116800-103120600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:103117200-103125800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:103117400-103121000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:103117400-103128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:103117600-103122200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:103119200-103120600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:103119200-103120600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:103119400-103120600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:103119600-103121000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:103120000-103120800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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