Variant report

Variant	rs10989074
Chromosome Location	chr9:103154207-103154208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10819755	1.00[CEU][hapmap]
rs10819758	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10819771	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989046	0.89[CEU][hapmap]
rs10989047	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989051	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989072	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989073	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989075	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989077	0.86[EUR][1000 genomes]
rs11790067	0.82[AMR][1000 genomes]
rs11790431	0.89[CEU][hapmap]
rs11791943	1.00[CHB][hapmap]
rs11794753	1.00[CHB][hapmap]
rs12000794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003468	0.86[CEU][hapmap]
rs12375859	0.83[EUR][1000 genomes]
rs12378432	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13284601	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919024	0.89[CEU][hapmap]
rs2039396	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039397	1.00[ASN][1000 genomes]
rs7027939	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029342	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7039994	0.89[CEU][hapmap]
rs7849019	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7866700	0.89[CEU][hapmap]
rs944942	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103146400-103157000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:103147600-103157200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:103150200-103156000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:103151800-103160000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:103152600-103154400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr9:103153200-103154600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:103153200-103154600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:103153400-103154600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:103153400-103155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:103153400-103157000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:103154000-103158000	Weak transcription	Left Ventricle	heart
12	chr9:103154200-103154400	Weak transcription	Fetal Lung	lung

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