Variant report

Variant	rs7037419
Chromosome Location	chr9:103103281-103103282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10819755	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10819757	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10819758	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819765	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819766	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819768	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989041	0.92[EUR][1000 genomes]
rs10989046	0.92[EUR][1000 genomes]
rs10989047	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989050	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989051	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989062	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989063	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989068	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989069	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989072	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989077	1.00[ASN][1000 genomes]
rs11515449	0.91[EUR][1000 genomes]
rs11515542	0.91[EUR][1000 genomes]
rs11788648	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790431	0.92[EUR][1000 genomes]
rs11791637	0.87[EUR][1000 genomes]
rs11791943	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793726	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794753	1.00[ASN][1000 genomes]
rs11795004	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003468	0.92[EUR][1000 genomes]
rs12005177	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352336	1.00[ASN][1000 genomes]
rs12375859	1.00[ASN][1000 genomes]
rs12379480	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919024	0.92[EUR][1000 genomes]
rs3199998	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274951	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274961	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62579387	1.00[ASN][1000 genomes]
rs7028101	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029342	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036972	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039994	0.92[EUR][1000 genomes]
rs7849019	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866700	0.90[EUR][1000 genomes]
rs7873560	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874036	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
3	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
4	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
5	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
7	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
8	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
10	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:103078600-103109000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:103079000-103103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:103079800-103107600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:103080000-103108400	Weak transcription	HSMMtube	muscle
18	chr9:103081000-103104200	Weak transcription	Fetal Heart	heart
19	chr9:103081200-103104600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:103081200-103107600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:103083800-103113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:103085800-103104400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:103086600-103107800	Weak transcription	NHLF	lung
25	chr9:103088400-103112000	Weak transcription	Brain Germinal Matrix	brain
26	chr9:103088600-103104200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:103088600-103107800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:103088600-103112400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:103088600-103113000	Weak transcription	Fetal Brain Female	brain
30	chr9:103088600-103114400	Weak transcription	Lung	lung
31	chr9:103088800-103107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:103088800-103108800	Weak transcription	Brain Anterior Caudate	brain
33	chr9:103088800-103112400	Weak transcription	Psoas Muscle	Psoas
34	chr9:103088800-103113400	Weak transcription	Fetal Intestine Small	intestine
35	chr9:103088800-103114400	Weak transcription	Gastric	stomach
36	chr9:103089400-103112800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:103090200-103107400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:103090600-103111600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:103090800-103107600	Weak transcription	Osteobl	bone
40	chr9:103091000-103103800	Weak transcription	HSMM	muscle
41	chr9:103091000-103108200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:103091000-103110200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:103091200-103104000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:103091200-103113200	Weak transcription	Liver	Liver
45	chr9:103092400-103103800	Weak transcription	GM12878-XiMat	blood
46	chr9:103092400-103107200	Weak transcription	HUVEC	blood vessel
47	chr9:103092400-103107400	Weak transcription	Fetal Lung	lung
48	chr9:103092400-103107600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:103092400-103107600	Weak transcription	NH-A	brain
50	chr9:103092400-103108800	Weak transcription	NHDF-Ad	bronchial

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