Variant report

Variant	rs10821022
Chromosome Location	chr9:95584993-95584994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10115872	0.95[ASN][1000 genomes]
rs10123843	0.95[ASN][1000 genomes]
rs10123870	0.90[ASN][1000 genomes]
rs10156497	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022833	0.92[ASN][1000 genomes]
rs1047868	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10739932	0.93[ASN][1000 genomes]
rs10739933	0.95[ASN][1000 genomes]
rs10739934	0.95[ASN][1000 genomes]
rs10761172	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761175	0.97[ASN][1000 genomes]
rs10821020	0.82[AFR][1000 genomes]
rs10821021	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821023	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10821028	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821030	0.95[ASN][1000 genomes]
rs10821031	0.95[ASN][1000 genomes]
rs10821032	0.93[ASN][1000 genomes]
rs10821035	0.95[ASN][1000 genomes]
rs10821040	0.82[ASN][1000 genomes]
rs10992484	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10992489	0.98[ASN][1000 genomes]
rs10992529	0.82[ASN][1000 genomes]
rs12336022	0.95[ASN][1000 genomes]
rs12337654	0.95[ASN][1000 genomes]
rs12338961	0.95[ASN][1000 genomes]
rs12346689	0.90[ASN][1000 genomes]
rs12379300	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288901	0.89[ASN][1000 genomes]
rs1810685	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1810686	0.82[AMR][1000 genomes]
rs1810687	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1972214	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1998483	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2009444	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28700150	0.97[ASN][1000 genomes]
rs36194652	0.82[ASN][1000 genomes]
rs3824428	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133033	0.82[ASN][1000 genomes]
rs4535796	0.85[ASN][1000 genomes]
rs4538949	0.82[ASN][1000 genomes]
rs4626670	0.82[ASN][1000 genomes]
rs4744148	0.82[AMR][1000 genomes]
rs4744150	0.93[ASN][1000 genomes]
rs4744151	0.93[ASN][1000 genomes]
rs6479434	0.95[ASN][1000 genomes]
rs7032277	0.95[ASN][1000 genomes]
rs7039812	0.95[ASN][1000 genomes]
rs7040645	0.93[ASN][1000 genomes]
rs7045305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7049211	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7847713	0.95[ASN][1000 genomes]
rs7847998	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850036	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7865255	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7866339	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7868123	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7869480	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869498	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7872848	0.82[ASN][1000 genomes]
rs7872987	0.82[ASN][1000 genomes]
rs7873021	0.95[ASN][1000 genomes]
rs7873259	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7873819	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7874026	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95583600-95596600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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