Variant report

Variant	rs12337654
Chromosome Location	chr9:95620313-95620314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95619636..95621333-chr9:95622156..95624775,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10115872	0.87[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10123843	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10123870	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10156497	0.95[ASN][1000 genomes]
rs1022833	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739932	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739933	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10739934	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10739938	0.84[AMR][1000 genomes]
rs10761172	0.95[ASN][1000 genomes]
rs10761175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761177	0.80[AMR][1000 genomes]
rs10821021	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10821022	0.95[ASN][1000 genomes]
rs10821028	0.95[ASN][1000 genomes]
rs10821030	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821031	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821032	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821035	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992489	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12003440	0.84[JPT][hapmap]
rs12336022	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12338961	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12346689	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12379300	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13288901	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13293147	0.88[JPT][hapmap]
rs13294147	0.86[JPT][hapmap]
rs2296060	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs28700150	0.98[ASN][1000 genomes]
rs36194652	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824428	0.95[ASN][1000 genomes]
rs4078292	0.86[JPT][hapmap]
rs4133033	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4535796	0.81[ASN][1000 genomes]
rs4744150	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744151	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479434	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7032277	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7035881	0.86[JPT][hapmap]
rs7039812	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7040645	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7043469	0.88[JPT][hapmap]
rs7045305	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7847713	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7847998	0.95[ASN][1000 genomes]
rs7859380	0.81[CEU][hapmap]
rs7869480	0.95[ASN][1000 genomes]
rs7873021	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7874026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9775485	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95605000-95624200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95611200-95620600	Strong transcription	Left Ventricle	heart
4	chr9:95611200-95632800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:95612400-95622000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:95612400-95622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:95612400-95624200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:95612600-95620400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr9:95612600-95620400	Strong transcription	Fetal Muscle Leg	muscle
10	chr9:95613200-95620400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:95613400-95621600	Weak transcription	HMEC	breast
12	chr9:95614000-95624200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr9:95614200-95620400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:95614400-95620400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:95615000-95620600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:95615200-95620600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:95615400-95620400	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:95615600-95620400	Strong transcription	Fetal Intestine Large	intestine
19	chr9:95616200-95620400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:95616200-95620800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:95616200-95621600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:95616200-95621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:95616200-95621800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:95616200-95622000	Weak transcription	Esophagus	oesophagus
25	chr9:95616200-95622000	Weak transcription	Stomach Mucosa	stomach
26	chr9:95616200-95622200	Weak transcription	NHLF	lung
27	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:95616400-95622000	Weak transcription	Aorta	Aorta
29	chr9:95616400-95632800	Weak transcription	Gastric	stomach
30	chr9:95616400-95639800	Weak transcription	Small Intestine	intestine
31	chr9:95616600-95639600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:95616800-95622000	Weak transcription	Spleen	Spleen
33	chr9:95618200-95621600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:95618200-95621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:95618200-95621800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:95618200-95622000	Weak transcription	Pancreas	Pancrea
37	chr9:95618200-95622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:95618200-95623000	Weak transcription	Fetal Brain Male	brain
39	chr9:95618200-95630200	Weak transcription	Right Ventricle	heart
40	chr9:95618200-95639800	Weak transcription	Colonic Mucosa	Colon
41	chr9:95618400-95621600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:95618400-95621600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:95618400-95621600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:95618400-95621600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:95618400-95621600	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:95618400-95621600	Weak transcription	Fetal Kidney	kidney
47	chr9:95618400-95621600	Weak transcription	HSMM	muscle
48	chr9:95618400-95621600	Weak transcription	HSMMtube	muscle
49	chr9:95618400-95621800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:95618400-95621800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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