Variant report

Variant	rs7043469
Chromosome Location	chr9:95720865-95720866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95719451..95721664-chr9:95870122..95872518,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10123843	0.88[JPT][hapmap]
rs1022833	0.88[JPT][hapmap]
rs10739933	0.88[JPT][hapmap]
rs10739934	0.88[JPT][hapmap]
rs10821030	0.88[JPT][hapmap]
rs10821035	0.88[JPT][hapmap]
rs10992489	0.86[JPT][hapmap]
rs12003440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12003885	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12336022	0.88[JPT][hapmap]
rs12337654	0.88[JPT][hapmap]
rs13284600	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13293147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294147	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17886128	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296060	0.88[JPT][hapmap]
rs34405247	0.97[ASN][1000 genomes]
rs34739544	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34953814	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35449185	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35721889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074836	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4078292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4260949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744150	0.86[JPT][hapmap]
rs4744151	0.86[JPT][hapmap]
rs4744160	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58264693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479434	0.86[JPT][hapmap]
rs7024752	0.87[ASN][1000 genomes]
rs7032277	0.88[JPT][hapmap]
rs7035881	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7039812	0.88[JPT][hapmap]
rs7040645	0.88[JPT][hapmap]
rs7856681	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7858810	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs7859461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873125	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9942865	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95717200-95721200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr9:95717200-95723400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:95717200-95724000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:95717400-95721000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr9:95717400-95721200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr9:95717400-95721200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:95717400-95722400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:95717400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:95719000-95723800	Weak transcription	Esophagus	oesophagus
15	chr9:95719600-95721600	Weak transcription	Primary T cells from cord blood	blood
16	chr9:95719600-95725800	Weak transcription	HepG2	liver
17	chr9:95720000-95722600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:95720200-95721800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:95720200-95724000	Weak transcription	Pancreas	Pancrea
21	chr9:95720800-95721000	Enhancers	Brain Germinal Matrix	brain
22	chr9:95720800-95721800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:95720800-95722000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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