Variant report

Variant	rs7024752
Chromosome Location	chr9:95685688-95685689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95675136..95677184-chr9:95685005..95687595,2	MCF-7	breast:
2	chr9:95684419..95686072-chr9:95691628..95694362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188101	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10821040	0.83[ASN][1000 genomes]
rs10992529	0.83[ASN][1000 genomes]
rs10992538	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10992539	0.81[AMR][1000 genomes]
rs12003440	0.84[ASN][1000 genomes]
rs12003885	0.94[ASN][1000 genomes]
rs13284600	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13293147	0.87[ASN][1000 genomes]
rs13294147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294885	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13296126	0.81[AMR][1000 genomes]
rs13296399	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13296762	0.81[AMR][1000 genomes]
rs13300953	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13301952	0.81[AMR][1000 genomes]
rs17886128	0.87[ASN][1000 genomes]
rs34405247	0.84[ASN][1000 genomes]
rs34739544	0.84[ASN][1000 genomes]
rs34953814	0.94[ASN][1000 genomes]
rs35449185	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35721889	0.87[ASN][1000 genomes]
rs4074836	0.94[ASN][1000 genomes]
rs4078292	0.86[ASN][1000 genomes]
rs4133033	0.83[ASN][1000 genomes]
rs4260949	0.87[ASN][1000 genomes]
rs4510923	0.86[ASN][1000 genomes]
rs4535796	0.82[ASN][1000 genomes]
rs4538949	0.83[ASN][1000 genomes]
rs4626670	0.83[ASN][1000 genomes]
rs4744160	0.84[ASN][1000 genomes]
rs58264693	0.87[ASN][1000 genomes]
rs7019037	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7023445	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7028639	0.89[AFR][1000 genomes]
rs7035868	0.86[ASN][1000 genomes]
rs7035881	0.87[ASN][1000 genomes]
rs7036244	0.81[AMR][1000 genomes]
rs7039230	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7043469	0.87[ASN][1000 genomes]
rs7047181	0.86[ASN][1000 genomes]
rs7856681	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7859461	0.90[ASN][1000 genomes]
rs7872848	0.83[ASN][1000 genomes]
rs7872987	0.83[ASN][1000 genomes]
rs7873125	0.90[ASN][1000 genomes]
rs9942865	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1818795	chr9:95656340-95689158	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95674800-95687400	Weak transcription	Right Atrium	heart

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