Variant report

Variant	rs34953814
Chromosome Location	chr9:95707332-95707333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95706512..95708726-chr9:95712017..95714192,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12003440	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12003885	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284600	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13293147	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13294147	0.94[ASN][1000 genomes]
rs17886128	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34405247	0.90[ASN][1000 genomes]
rs34739544	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35449185	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35721889	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074836	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078292	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4260949	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744160	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58264693	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7024752	0.94[ASN][1000 genomes]
rs7035881	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7043469	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7856681	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7859461	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873125	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9942865	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3373273	chr9:95707031-95711229	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
2	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:95703600-95709200	Weak transcription	Spleen	Spleen
4	chr9:95704400-95707400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:95704600-95709200	Weak transcription	HSMMtube	muscle
6	chr9:95705800-95708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:95705800-95709000	Weak transcription	Fetal Brain Female	brain
8	chr9:95705800-95709200	Weak transcription	Esophagus	oesophagus
9	chr9:95706000-95708800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:95706000-95708800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:95706000-95708800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:95706400-95709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:95706400-95709200	Weak transcription	HSMM	muscle
14	chr9:95706400-95709400	Weak transcription	Psoas Muscle	Psoas
15	chr9:95706800-95707400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:95707000-95707400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:95707000-95708400	Enhancers	Fetal Muscle Trunk	muscle
18	chr9:95707000-95708400	Enhancers	Fetal Muscle Leg	muscle
19	chr9:95707200-95707400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr9:95707200-95707400	Enhancers	Ovary	ovary
21	chr9:95707200-95707400	Enhancers	Right Ventricle	heart
22	chr9:95707200-95707400	Enhancers	Skeletal Muscle Male	skeletal muscle

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