Variant report

Variant	rs4260949
Chromosome Location	chr9:95719276-95719277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95717933..95719631-chr9:95737454..95739058,2	MCF-7	breast:
2	chr9:95570706..95571359-chr9:95719247..95719879,2	MCF-7	breast:
3	chr9:95685909..95687885-chr9:95716846..95719770,2	K562	blood:
4	chr9:95718780..95720145-chr9:95765787..95766663,4	MCF-7	breast:
5	chr9:95717079..95719692-chr9:95722710..95724404,2	K562	blood:
6	chr9:95719154..95719747-chr9:96067293..96068188,3	MCF-7	breast:
7	chr9:95718163..95719801-chr9:95894145..95896768,2	MCF-7	breast:
8	chr9:95719185..95719752-chr9:95765738..95766670,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12003440	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12003885	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13284600	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13293147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294147	0.87[ASN][1000 genomes]
rs17886128	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405247	0.97[ASN][1000 genomes]
rs34739544	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34953814	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35449185	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35721889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074836	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4078292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744160	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58264693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024752	0.87[ASN][1000 genomes]
rs7035881	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7043469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856681	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7858810	0.81[AMR][1000 genomes]
rs7859461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873125	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9942865	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95717200-95720800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:95717200-95721200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr9:95717200-95723400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:95717200-95724000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:95717400-95719400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:95717400-95719600	Enhancers	Primary T cells from cord blood	blood
12	chr9:95717400-95719800	Enhancers	Brain Germinal Matrix	brain
13	chr9:95717400-95720800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:95717400-95721000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr9:95717400-95721200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr9:95717400-95721200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:95717400-95722400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:95717400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr9:95717600-95719400	Weak transcription	Dnd41	blood
20	chr9:95719000-95723800	Weak transcription	Esophagus	oesophagus
21	chr9:95719200-95719600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:95719200-95720200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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