Variant report

Variant	rs7035881
Chromosome Location	chr9:95723163-95723164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr9:95722746-95723405	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95717079..95719692-chr9:95722710..95724404,2	K562	blood:
2	chr9:95722857..95724411-chr9:95734649..95737063,2	MCF-7	breast:
3	chr9:95716673..95718561-chr9:95722423..95724467,2	MCF-7	breast:
4	chr9:95722390..95724791-chr9:95916678..95919347,2	MCF-7	breast:

Variant related genes	Relation type
FGD3	TF binding region
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10123843	0.86[JPT][hapmap]
rs1022833	0.86[JPT][hapmap]
rs10739933	0.86[JPT][hapmap]
rs10739934	0.86[JPT][hapmap]
rs10821030	0.86[JPT][hapmap]
rs10821035	0.86[JPT][hapmap]
rs10992489	0.86[JPT][hapmap]
rs12003440	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12003885	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12336022	0.86[JPT][hapmap]
rs12337654	0.86[JPT][hapmap]
rs13284600	0.87[ASN][1000 genomes]
rs13293147	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13294147	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17886128	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2296060	0.86[JPT][hapmap]
rs34405247	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34739544	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34953814	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35449185	0.87[ASN][1000 genomes]
rs35721889	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4074836	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4078292	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4260949	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4744150	0.86[JPT][hapmap]
rs4744151	0.86[JPT][hapmap]
rs4744160	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58264693	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6479434	0.86[JPT][hapmap]
rs7024752	0.87[ASN][1000 genomes]
rs7032277	0.86[JPT][hapmap]
rs7039812	0.86[JPT][hapmap]
rs7040645	0.86[JPT][hapmap]
rs7043469	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7856681	0.90[ASN][1000 genomes]
rs7859461	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7873125	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95717200-95723400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:95717200-95724000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:95717400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95719000-95723800	Weak transcription	Esophagus	oesophagus
10	chr9:95719600-95725800	Weak transcription	HepG2	liver
11	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:95720200-95724000	Weak transcription	Pancreas	Pancrea
13	chr9:95721000-95724000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:95721600-95724200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr9:95721600-95725800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr9:95721800-95723800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:95721800-95725800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:95722000-95723400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr9:95722000-95723400	Weak transcription	GM12878-XiMat	blood
20	chr9:95722000-95724400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:95722200-95726000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:95722400-95725600	Weak transcription	Thymus	Thymus
23	chr9:95722600-95723600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr9:95722600-95723800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:95723000-95723200	Weak transcription	Brain Germinal Matrix	brain
26	chr9:95723000-95725600	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links