Variant report

Variant	rs1022833
Chromosome Location	chr9:95626631-95626632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95622406..95624700-chr9:95624887..95627823,2	MCF-7	breast:
2	chr9:95622113..95625066-chr9:95625770..95628383,4	K562	blood:
3	chr9:95616347..95619799-chr9:95626429..95628758,3	K562	blood:

Variant related genes	Relation type
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10115872	0.92[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123843	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123870	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10156497	0.92[ASN][1000 genomes]
rs10739932	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739938	0.81[AMR][1000 genomes]
rs10761172	0.92[ASN][1000 genomes]
rs10761175	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821021	0.92[ASN][1000 genomes]
rs10821022	0.92[ASN][1000 genomes]
rs10821028	0.92[ASN][1000 genomes]
rs10821030	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821031	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821032	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821035	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821040	0.81[ASN][1000 genomes]
rs10992489	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992529	0.81[ASN][1000 genomes]
rs12003440	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs12336022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12337654	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12338961	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12346689	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12379300	0.92[ASN][1000 genomes]
rs13288901	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13293147	0.88[JPT][hapmap]
rs13294147	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2296060	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs28700150	0.88[ASN][1000 genomes]
rs36194652	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824428	0.92[ASN][1000 genomes]
rs4078292	0.86[JPT][hapmap]
rs4133033	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4535796	0.84[ASN][1000 genomes]
rs4538949	0.81[ASN][1000 genomes]
rs4626670	0.81[ASN][1000 genomes]
rs4744150	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479434	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7032277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7035881	0.86[JPT][hapmap]
rs7039812	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7040645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043469	0.88[JPT][hapmap]
rs7045305	0.92[ASN][1000 genomes]
rs7847713	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7847998	0.92[ASN][1000 genomes]
rs7869480	0.92[ASN][1000 genomes]
rs7872848	0.81[ASN][1000 genomes]
rs7872987	0.81[ASN][1000 genomes]
rs7873021	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874026	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95611200-95632800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95616400-95632800	Weak transcription	Gastric	stomach
5	chr9:95616400-95639800	Weak transcription	Small Intestine	intestine
6	chr9:95616600-95639600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:95618200-95630200	Weak transcription	Right Ventricle	heart
8	chr9:95618200-95639800	Weak transcription	Colonic Mucosa	Colon
9	chr9:95618400-95637600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:95618400-95638600	Weak transcription	K562	blood
11	chr9:95618600-95630400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:95618600-95630800	Weak transcription	Psoas Muscle	Psoas
13	chr9:95618600-95638000	Weak transcription	Brain Anterior Caudate	brain
14	chr9:95619600-95638600	Weak transcription	Brain Angular Gyrus	brain
15	chr9:95619800-95630200	Weak transcription	HepG2	liver
16	chr9:95620000-95627000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:95620000-95630000	Weak transcription	HUVEC	blood vessel
18	chr9:95621600-95626800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:95622400-95629800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:95622400-95630000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:95622400-95630000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:95622400-95630200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:95622400-95630800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:95622400-95631600	Weak transcription	Osteobl	bone
25	chr9:95622400-95632800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:95622400-95632800	Weak transcription	Thymus	Thymus
27	chr9:95622400-95635200	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:95622400-95637600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:95622400-95637800	Weak transcription	Hela-S3	cervix
30	chr9:95622400-95638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:95622400-95638000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:95622400-95638600	Weak transcription	HMEC	breast
33	chr9:95622400-95638600	Weak transcription	NHDF-Ad	bronchial
34	chr9:95622400-95638800	Weak transcription	NHLF	lung
35	chr9:95622600-95627200	Weak transcription	Fetal Intestine Large	intestine
36	chr9:95622600-95627400	Weak transcription	Fetal Intestine Small	intestine
37	chr9:95622600-95627800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr9:95622600-95628000	Weak transcription	Lung	lung
39	chr9:95622600-95629000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:95622600-95629000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:95622600-95629000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:95622600-95629000	Weak transcription	Brain Germinal Matrix	brain
43	chr9:95622600-95629200	Weak transcription	A549	lung
44	chr9:95622600-95629800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:95622600-95630000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr9:95622600-95630000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:95622600-95630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:95622600-95630200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:95622600-95630200	Weak transcription	Placenta	Placenta
50	chr9:95622600-95630200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links