Variant report

Variant	rs13294147
Chromosome Location	chr9:95691037-95691038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95675676..95677800-chr9:95688606..95691210,2	MCF-7	breast:
2	chr9:95680681..95683680-chr9:95689468..95691855,3	MCF-7	breast:
3	chr9:95690534..95692700-chr9:95858099..95859970,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10123843	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1022833	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10739933	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10739934	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10821030	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10821035	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10821040	0.83[ASN][1000 genomes]
rs10821041	0.80[EUR][1000 genomes]
rs10992489	0.84[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs10992529	0.83[ASN][1000 genomes]
rs10992538	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992539	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12003440	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12003885	0.94[ASN][1000 genomes]
rs12336022	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12337654	0.86[JPT][hapmap]
rs13284600	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13293147	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13294885	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13296126	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13296399	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13296762	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13300953	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13301952	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs17886128	0.87[ASN][1000 genomes]
rs2296060	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs34405247	0.84[ASN][1000 genomes]
rs34739544	0.84[ASN][1000 genomes]
rs34953814	0.94[ASN][1000 genomes]
rs35449185	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35721889	0.87[ASN][1000 genomes]
rs4074836	0.94[ASN][1000 genomes]
rs4078292	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[ASN][1000 genomes]
rs4133033	0.83[ASN][1000 genomes]
rs4260949	0.87[ASN][1000 genomes]
rs4510923	0.86[ASN][1000 genomes]
rs4535796	0.82[ASN][1000 genomes]
rs4538949	0.83[ASN][1000 genomes]
rs4626670	0.83[ASN][1000 genomes]
rs4744150	0.84[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs4744151	0.84[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs4744160	0.84[ASN][1000 genomes]
rs58264693	0.87[ASN][1000 genomes]
rs6479434	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7019037	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7023445	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7024752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028639	0.91[AFR][1000 genomes]
rs7032277	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7035868	0.86[ASN][1000 genomes]
rs7035881	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7036244	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7039230	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7039812	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7040645	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7041179	0.81[EUR][1000 genomes]
rs7043469	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7047181	0.86[ASN][1000 genomes]
rs7856681	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7859461	0.90[ASN][1000 genomes]
rs7872848	0.83[ASN][1000 genomes]
rs7872987	0.83[ASN][1000 genomes]
rs7873125	0.90[ASN][1000 genomes]
rs7875838	0.81[EUR][1000 genomes]
rs9942865	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13294147	CENPP	cis	cerebellum	SCAN
rs13294147	ZNF484	cis	cerebellum	SCAN
rs13294147	ZNF484	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95690600-95691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95690600-95691600	Enhancers	HMEC	breast
3	chr9:95690600-95691800	Enhancers	NHDF-Ad	bronchial
4	chr9:95690600-95691800	Enhancers	NHEK	skin
5	chr9:95690800-95691400	Enhancers	Osteobl	bone
6	chr9:95690800-95691600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:95690800-95691600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:95690800-95691800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:95690800-95691800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:95691000-95691600	Enhancers	Hela-S3	cervix

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