Variant report

Variant	rs7041179
Chromosome Location	chr9:95694128-95694129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95686470..95688704-chr9:95692364..95694888,3	K562	blood:
2	chr9:95684419..95686072-chr9:95691628..95694362,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10821041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821042	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992538	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992539	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13294147	0.81[EUR][1000 genomes]
rs13294885	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13296126	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13296399	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13296762	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13300953	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13301952	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16908645	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35777567	0.92[ASN][1000 genomes]
rs35861549	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7019037	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7022506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7023445	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027556	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027677	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027690	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7027692	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7028639	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7036244	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7039230	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042751	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341754	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341851	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7856213	0.93[ASN][1000 genomes]
rs7856228	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7856678	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7858810	0.96[ASN][1000 genomes]
rs7875838	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95691600-95695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95691800-95697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:95693600-95694800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:95693600-95694800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:95693800-95694200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr9:95693800-95694200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:95693800-95694200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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