Variant report

Variant	rs35861549
Chromosome Location	chr9:95698419-95698420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10821041	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10821042	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10992538	0.97[ASN][1000 genomes]
rs10992539	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12003885	0.81[EUR][1000 genomes]
rs13284600	0.82[AMR][1000 genomes]
rs13294885	0.94[ASN][1000 genomes]
rs13296126	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13296399	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13296762	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13300953	0.95[ASN][1000 genomes]
rs13301952	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16908645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35777567	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7019037	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7022506	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7023445	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7027556	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7027677	0.82[ASN][1000 genomes]
rs7027690	0.87[ASN][1000 genomes]
rs7027692	0.91[ASN][1000 genomes]
rs7028639	0.82[ASN][1000 genomes]
rs7036244	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7039230	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7041179	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7042751	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7341754	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7341851	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856213	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7856228	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856678	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856681	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7858810	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873125	0.81[EUR][1000 genomes]
rs7875838	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35861549	FGD3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95694800-95700000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr9:95696400-95700000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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