Variant report

Variant	rs7858810
Chromosome Location	chr9:95704358-95704359
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95703185..95705772-chr9:95707942..95710930,2	MCF-7	breast:
2	chr9:95704230..95706999-chr9:95707929..95710498,2	K562	blood:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10821041	0.96[ASN][1000 genomes]
rs10821042	0.96[ASN][1000 genomes]
rs10992538	0.95[ASN][1000 genomes]
rs10992539	0.95[ASN][1000 genomes]
rs12003885	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13284600	0.80[AMR][1000 genomes]
rs13293147	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs13294885	0.92[ASN][1000 genomes]
rs13296126	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs13296399	0.95[ASN][1000 genomes]
rs13296762	0.94[ASN][1000 genomes]
rs13300953	0.94[ASN][1000 genomes]
rs13301952	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs16908645	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17886128	0.81[AMR][1000 genomes]
rs35721889	0.81[AMR][1000 genomes]
rs35777567	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861549	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4074836	0.82[AMR][1000 genomes]
rs4078292	0.88[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs4260949	0.81[AMR][1000 genomes]
rs58264693	0.81[AMR][1000 genomes]
rs7019037	0.95[ASN][1000 genomes]
rs7022506	0.95[ASN][1000 genomes]
rs7023445	0.95[ASN][1000 genomes]
rs7027556	0.94[ASN][1000 genomes]
rs7027677	0.81[ASN][1000 genomes]
rs7027690	0.86[ASN][1000 genomes]
rs7027692	0.89[ASN][1000 genomes]
rs7028639	0.81[ASN][1000 genomes]
rs7036244	0.93[ASN][1000 genomes]
rs7039230	0.94[ASN][1000 genomes]
rs7041179	0.96[ASN][1000 genomes]
rs7042751	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7043469	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs7341754	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7341851	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856213	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7856228	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856678	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856681	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7859461	0.82[AMR][1000 genomes]
rs7873125	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7875838	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7858810	FGD3	cis	Skin Sun Exposed Lower leg	GTEx
rs7858810	ZNF484	cis	parietal	SCAN
rs7858810	ZNF484	cis	cerebellum	SCAN
rs7858810	CENPP	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95701200-95704400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
3	chr9:95702800-95706600	Enhancers	Fetal Muscle Trunk	muscle
4	chr9:95703000-95706600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:95703200-95706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:95703600-95705800	Enhancers	Fetal Stomach	stomach
8	chr9:95703600-95709200	Weak transcription	Spleen	Spleen
9	chr9:95704000-95704600	Enhancers	HSMMtube	muscle
10	chr9:95704000-95705600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:95704200-95704400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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