Variant report

Variant	rs13284600
Chromosome Location	chr9:95696252-95696253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95695800..95697865-chr9:95699486..95701203,2	MCF-7	breast:
2	chr9:95691380..95693940-chr9:95694978..95697787,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10123843	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1022833	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10739933	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10739934	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10821030	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10821035	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10992489	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12003440	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12003885	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12336022	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12337654	0.86[JPT][hapmap]
rs13293147	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13294147	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16908645	0.82[AMR][1000 genomes]
rs17886128	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2296060	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs34405247	0.84[ASN][1000 genomes]
rs34739544	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34953814	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35449185	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35721889	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35861549	0.82[AMR][1000 genomes]
rs4074836	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4078292	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4260949	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744150	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4744151	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4744160	0.84[ASN][1000 genomes]
rs58264693	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479434	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7024752	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7032277	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7035881	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7039812	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7040645	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7042751	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7043469	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7341754	0.81[AMR][1000 genomes]
rs7341851	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7856228	0.81[AMR][1000 genomes]
rs7856681	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7858810	0.84[CEU][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.80[AMR][1000 genomes]
rs7859461	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7873125	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9942865	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13284600	ZNF484	cis	cerebellum	SCAN
rs13284600	CENPP	cis	cerebellum	SCAN
rs13284600	ZNF484	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95691800-95697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:95694200-95696400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:95694800-95700000	Weak transcription	Primary monocytes fromperipheralblood	blood

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