Variant report

Variant	rs9942865
Chromosome Location	chr9:95703878-95703879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12003885	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13284600	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13293147	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13294147	0.87[ASN][1000 genomes]
rs17886128	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34739544	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34953814	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35449185	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35721889	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4074836	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4078292	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4260949	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58264693	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7024752	0.87[ASN][1000 genomes]
rs7043469	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7856681	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7859461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7873125	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95700800-95704000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:95701200-95704400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
4	chr9:95702800-95706600	Enhancers	Fetal Muscle Trunk	muscle
5	chr9:95703000-95706600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:95703200-95706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
8	chr9:95703600-95704200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:95703600-95705800	Enhancers	Fetal Stomach	stomach
10	chr9:95703600-95709200	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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