Variant report

Variant	rs58264693
Chromosome Location	chr9:95717923-95717924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95711746..95713546-chr9:95716318..95718556,2	MCF-7	breast:
2	chr9:95685909..95687885-chr9:95716846..95719770,2	K562	blood:
3	chr9:95716673..95718561-chr9:95722423..95724467,2	MCF-7	breast:
4	chr9:95717079..95719692-chr9:95722710..95724404,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12003440	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12003885	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13284600	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13293147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294147	0.87[ASN][1000 genomes]
rs17886128	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405247	0.97[ASN][1000 genomes]
rs34739544	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34953814	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35449185	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35721889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074836	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4078292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4260949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744160	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7024752	0.87[ASN][1000 genomes]
rs7035881	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7043469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856681	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7858810	0.81[AMR][1000 genomes]
rs7859461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873125	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9942865	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95715600-95718000	Enhancers	Fetal Thymus	thymus
3	chr9:95716800-95718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:95717000-95718000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:95717000-95719200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:95717200-95720800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:95717200-95721200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr9:95717200-95723400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:95717200-95724000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:95717400-95718600	Weak transcription	Esophagus	oesophagus
15	chr9:95717400-95719400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:95717400-95719600	Enhancers	Primary T cells from cord blood	blood
17	chr9:95717400-95719800	Enhancers	Brain Germinal Matrix	brain
18	chr9:95717400-95720800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:95717400-95721000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:95717400-95721200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr9:95717400-95721200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:95717400-95722400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:95717400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr9:95717600-95718200	Weak transcription	GM12878-XiMat	blood
25	chr9:95717600-95719400	Weak transcription	Dnd41	blood
26	chr9:95717800-95718000	Enhancers	Fetal Brain Male	brain

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