Variant report

Variant	rs34405247
Chromosome Location	chr9:95729258-95729259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95726879..95729699-chr9:95735044..95738591,3	K562	blood:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12003440	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12003885	0.90[ASN][1000 genomes]
rs13284600	0.84[ASN][1000 genomes]
rs13293147	0.97[ASN][1000 genomes]
rs13294147	0.84[ASN][1000 genomes]
rs17886128	0.97[ASN][1000 genomes]
rs34739544	1.00[ASN][1000 genomes]
rs34953814	0.90[ASN][1000 genomes]
rs35449185	0.84[ASN][1000 genomes]
rs35721889	0.97[ASN][1000 genomes]
rs4074836	0.90[ASN][1000 genomes]
rs4078292	0.95[ASN][1000 genomes]
rs4260949	0.97[ASN][1000 genomes]
rs4744160	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58264693	0.97[ASN][1000 genomes]
rs7024752	0.84[ASN][1000 genomes]
rs7035881	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043469	0.97[ASN][1000 genomes]
rs7856681	0.87[ASN][1000 genomes]
rs7859461	0.93[ASN][1000 genomes]
rs7873125	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34405247	CENPP,IPPK	cis	brain	BrainEAC

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:95726400-95730200	Active TSS	Primary T killer memory cells from peripheral blood	blood
5	chr9:95726600-95730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:95726800-95731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:95726800-95731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:95726800-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
11	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Dnd41	blood
12	chr9:95727400-95729600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:95728000-95729400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
14	chr9:95728000-95732400	Weak transcription	Left Ventricle	heart
15	chr9:95728000-95733800	Weak transcription	Right Atrium	heart
16	chr9:95728200-95731200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:95728200-95739600	Weak transcription	Fetal Stomach	stomach
18	chr9:95728400-95730600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:95728400-95731200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:95728400-95731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:95728400-95732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:95728600-95729600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
23	chr9:95728600-95729800	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr9:95728600-95730600	Weak transcription	Brain Germinal Matrix	brain
25	chr9:95728600-95731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:95728600-95732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:95728600-95732200	Weak transcription	Brain Anterior Caudate	brain
28	chr9:95728600-95732600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:95728600-95733200	Genic enhancers	Spleen	Spleen
30	chr9:95728800-95729600	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:95728800-95730000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr9:95728800-95730400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:95728800-95731000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:95728800-95731200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:95728800-95731400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:95728800-95732800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:95728800-95732800	Weak transcription	Brain Substantia Nigra	brain
38	chr9:95728800-95733600	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:95728800-95733800	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr9:95728800-95739400	Weak transcription	Gastric	stomach
41	chr9:95728800-95739600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
43	chr9:95729000-95729400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr9:95729000-95729400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:95729000-95729400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:95729000-95730200	Weak transcription	Liver	Liver
47	chr9:95729000-95730200	Weak transcription	Placenta	Placenta
48	chr9:95729000-95730600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:95729000-95731200	Weak transcription	Pancreas	Pancrea
50	chr9:95729000-95731800	Weak transcription	Esophagus	oesophagus

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