Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95706512..95708726-chr9:95712017..95714192,2	K562	blood:
2	chr9:95704230..95706999-chr9:95707929..95710498,2	K562	blood:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10821041	0.92[ASN][1000 genomes]
rs10821042	0.92[ASN][1000 genomes]
rs10992538	0.91[ASN][1000 genomes]
rs10992539	0.91[ASN][1000 genomes]
rs13294885	0.88[ASN][1000 genomes]
rs13296126	0.89[ASN][1000 genomes]
rs13296399	0.91[ASN][1000 genomes]
rs13296762	0.89[ASN][1000 genomes]
rs13300953	0.89[ASN][1000 genomes]
rs13301952	0.91[ASN][1000 genomes]
rs16908645	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35861549	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7019037	0.91[ASN][1000 genomes]
rs7022506	0.91[ASN][1000 genomes]
rs7023445	0.90[ASN][1000 genomes]
rs7027556	0.89[ASN][1000 genomes]
rs7027690	0.81[ASN][1000 genomes]
rs7027692	0.85[ASN][1000 genomes]
rs7036244	0.89[ASN][1000 genomes]
rs7039230	0.90[ASN][1000 genomes]
rs7041179	0.92[ASN][1000 genomes]
rs7042751	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7341754	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7341851	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7856213	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7856228	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7856678	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7858810	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7875838	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35777567	FGD3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
2	chr9:95702800-95706600	Enhancers	Fetal Muscle Trunk	muscle
3	chr9:95703000-95706600	Enhancers	Fetal Muscle Leg	muscle
4	chr9:95703200-95706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:95703600-95709200	Weak transcription	Spleen	Spleen
7	chr9:95704400-95707400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:95704600-95709200	Weak transcription	HSMMtube	muscle
9	chr9:95705600-95707000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:95705800-95708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:95705800-95709000	Weak transcription	Fetal Brain Female	brain
12	chr9:95705800-95709200	Weak transcription	Esophagus	oesophagus
13	chr9:95706000-95708800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:95706000-95708800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:95706000-95708800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:95706400-95707200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:95706400-95709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:95706400-95709200	Weak transcription	HSMM	muscle
19	chr9:95706400-95709400	Weak transcription	Psoas Muscle	Psoas

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