Variant report

Variant	rs13296399
Chromosome Location	chr9:95691207-95691208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95675676..95677800-chr9:95688606..95691210,2	MCF-7	breast:
2	chr9:95680681..95683680-chr9:95689468..95691855,3	MCF-7	breast:
3	chr9:95690534..95692700-chr9:95858099..95859970,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10821041	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821042	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992538	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294147	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13294885	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13296126	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13296762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13300953	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13301952	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908645	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35777567	0.91[ASN][1000 genomes]
rs35861549	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7019037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022506	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024752	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7027556	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027677	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027690	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7027692	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7028639	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7036244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7039230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041179	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042751	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7341754	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7341851	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7856213	0.92[ASN][1000 genomes]
rs7856228	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7856678	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7858810	0.95[ASN][1000 genomes]
rs7875838	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95690600-95691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95690600-95691600	Enhancers	HMEC	breast
3	chr9:95690600-95691800	Enhancers	NHDF-Ad	bronchial
4	chr9:95690600-95691800	Enhancers	NHEK	skin
5	chr9:95690800-95691400	Enhancers	Osteobl	bone
6	chr9:95690800-95691600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:95690800-95691600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:95690800-95691800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:95690800-95691800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:95691000-95691600	Enhancers	Hela-S3	cervix
11	chr9:95691200-95691600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:95691200-95691600	Enhancers	A549	lung
13	chr9:95691200-95691600	Enhancers	HSMMtube	muscle

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