Variant report

Variant	rs36194652
Chromosome Location	chr11:127786622-127786623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10115872	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10123843	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10123870	0.86[EUR][1000 genomes]
rs10156497	0.82[ASN][1000 genomes]
rs1022833	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10739932	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10739933	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10739934	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761172	0.82[ASN][1000 genomes]
rs10761175	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821021	0.82[ASN][1000 genomes]
rs10821022	0.82[ASN][1000 genomes]
rs10821028	0.82[ASN][1000 genomes]
rs10821030	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821031	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821032	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821035	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821040	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992489	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992529	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12336022	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12337654	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12338961	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12346689	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12379300	0.82[ASN][1000 genomes]
rs13288901	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3824428	0.82[ASN][1000 genomes]
rs4133033	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4510923	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4538949	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4626670	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744150	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744151	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479434	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032277	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7035868	0.83[AMR][1000 genomes]
rs7039812	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7040645	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7045305	0.82[ASN][1000 genomes]
rs7047181	0.83[AMR][1000 genomes]
rs7847713	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7847998	0.82[ASN][1000 genomes]
rs7869480	0.82[ASN][1000 genomes]
rs7872848	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7872987	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7873021	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7874026	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv526723	chr11:127671315-127796350	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127775000-127787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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