Variant report

Variant	rs10822101
Chromosome Location	chr10:52777456-52777457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10128514	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10822095	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995339	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2339680	0.91[AFR][1000 genomes]
rs2879549	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35756803	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479839	0.84[EUR][1000 genomes]
rs7070266	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7093621	0.85[EUR][1000 genomes]
rs7100141	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7905728	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10822101	ARHGAP22	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52768000-52782800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52772000-52782000	Weak transcription	Right Atrium	heart
4	chr10:52774800-52787400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:52775400-52782000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:52776000-52780200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:52776000-52780400	Weak transcription	Aorta	Aorta
8	chr10:52776000-52782800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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