Variant report
Variant | rs10824950 |
---|---|
Chromosome Location | chr10:54974588-54974589 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:54974391..54976394-chr10:54976441..54978497,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10762947 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10762948 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10762949 | 0.94[EUR][1000 genomes] |
rs10762950 | 0.94[EUR][1000 genomes] |
rs10762951 | 0.94[EUR][1000 genomes] |
rs10762952 | 0.94[EUR][1000 genomes] |
rs10762953 | 0.94[EUR][1000 genomes] |
rs10762954 | 0.88[EUR][1000 genomes] |
rs10824945 | 0.86[ASN][1000 genomes] |
rs10824953 | 0.88[EUR][1000 genomes] |
rs11003449 | 0.86[ASN][1000 genomes] |
rs11003450 | 0.86[ASN][1000 genomes] |
rs11003462 | 0.95[ASN][1000 genomes] |
rs11003466 | 0.87[EUR][1000 genomes] |
rs11003467 | 0.94[EUR][1000 genomes] |
rs11003471 | 0.93[EUR][1000 genomes] |
rs11003476 | 0.88[EUR][1000 genomes] |
rs11003477 | 0.88[EUR][1000 genomes] |
rs12413785 | 0.95[ASN][1000 genomes] |
rs1903933 | 0.87[EUR][1000 genomes] |
rs1903946 | 0.88[EUR][1000 genomes] |
rs1903947 | 0.88[EUR][1000 genomes] |
rs2384154 | 0.95[ASN][1000 genomes] |
rs2384155 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2384159 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2384160 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2384167 | 0.82[ASN][1000 genomes] |
rs4935066 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4935067 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4935402 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7091768 | 0.91[EUR][1000 genomes] |
rs7907631 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9665038 | 0.82[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2752952 | chr10:54900994-55497594 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv831878 | chr10:54902106-55085586 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1054455 | chr10:54932474-55001559 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
4 | nsv895408 | chr10:54938398-54999514 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:54966400-54981600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr10:54970400-54974600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |