Variant report
| Variant | rs2384159 |
|---|---|
| Chromosome Location | chr10:54973464-54973465 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:54961525..54963201-chr10:54972554..54974128,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10762947 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10762948 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10762949 | 0.81[EUR][1000 genomes] |
| rs10762950 | 0.81[EUR][1000 genomes] |
| rs10762951 | 0.80[EUR][1000 genomes] |
| rs10762952 | 0.81[EUR][1000 genomes] |
| rs10762953 | 0.81[EUR][1000 genomes] |
| rs10824945 | 0.92[ASN][1000 genomes] |
| rs10824950 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11003449 | 0.92[ASN][1000 genomes] |
| rs11003450 | 0.92[ASN][1000 genomes] |
| rs11003462 | 0.89[ASN][1000 genomes] |
| rs11003467 | 0.81[EUR][1000 genomes] |
| rs12413785 | 0.89[ASN][1000 genomes] |
| rs1903933 | 0.93[EUR][1000 genomes] |
| rs2384154 | 0.89[ASN][1000 genomes] |
| rs2384155 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2384160 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2384167 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2384189 | 0.84[EUR][1000 genomes] |
| rs4935066 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4935067 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4935402 | 0.87[ASN][1000 genomes] |
| rs7897385 | 0.84[EUR][1000 genomes] |
| rs7907631 | 0.81[EUR][1000 genomes] |
| rs9299548 | 0.84[ASN][1000 genomes] |
| rs9665038 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752952 | chr10:54900994-55497594 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv831878 | chr10:54902106-55085586 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054455 | chr10:54932474-55001559 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv895408 | chr10:54938398-54999514 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:54966400-54981600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr10:54970400-54974600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
