Variant report

Variant	rs12413785
Chromosome Location	chr10:54976552-54976553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10762947	0.98[ASN][1000 genomes]
rs10762948	0.98[ASN][1000 genomes]
rs10762955	0.82[ASN][1000 genomes]
rs10824945	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10824950	0.95[ASN][1000 genomes]
rs11003449	0.84[ASN][1000 genomes]
rs11003450	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11003462	1.00[ASN][1000 genomes]
rs2384154	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384155	0.89[ASN][1000 genomes]
rs2384159	0.89[ASN][1000 genomes]
rs2384160	0.89[ASN][1000 genomes]
rs2384189	0.81[ASN][1000 genomes]
rs4935066	0.91[ASN][1000 genomes]
rs4935067	0.91[ASN][1000 genomes]
rs7907631	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54966400-54981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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