Variant report

Variant	rs10827920
Chromosome Location	chr10:18250338-18250339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11011589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11011622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11011721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011754	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11011850	1.00[CEU][hapmap];0.89[ASN][1000 genomes]
rs11011896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11011929	1.00[AFR][1000 genomes]
rs11011980	1.00[AFR][1000 genomes]
rs11012030	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs11012037	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12354582	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12358385	0.95[ASN][1000 genomes]
rs12359337	1.00[AFR][1000 genomes]
rs12359445	1.00[CHB][hapmap]
rs16916742	1.00[AFR][1000 genomes]
rs17658718	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs55691793	0.95[ASN][1000 genomes]
rs55910920	0.95[ASN][1000 genomes]
rs7096615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18249400-18258200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:18250200-18252800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:18250200-18253200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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