Variant report

Variant	rs17658718
Chromosome Location	chr10:18276586-18276587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10827920	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs11011589	1.00[AFR][1000 genomes]
rs11011622	1.00[AFR][1000 genomes]
rs11011721	1.00[AFR][1000 genomes]
rs11011850	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011929	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11011980	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012030	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012036	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012037	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12354582	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359337	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359445	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16916742	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16916744	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16916745	0.94[ASN][1000 genomes]
rs16916765	0.89[ASN][1000 genomes]
rs6482123	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096615	1.00[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18273400-18278400	Weak transcription	NHDF-Ad	bronchial
2	chr10:18273600-18278800	Weak transcription	NHEK	skin
3	chr10:18273600-18279000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:18273600-18279000	Weak transcription	Osteobl	bone
5	chr10:18273600-18282000	Weak transcription	Hela-S3	cervix
6	chr10:18273800-18278800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18276400-18276600	ZNF genes & repeats	Brain Substantia Nigra	brain
8	chr10:18276400-18277000	Weak transcription	NHLF	lung
9	chr10:18276400-18280200	Enhancers	GM12878-XiMat	blood

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