Variant report

Variant	rs11011850
Chromosome Location	chr10:18270208-18270209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10827920	1.00[CEU][hapmap];0.89[ASN][1000 genomes]
rs11011896	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011929	0.88[AMR][1000 genomes]
rs11011980	0.83[ASN][1000 genomes]
rs11012030	0.83[ASN][1000 genomes]
rs11012036	0.83[ASN][1000 genomes]
rs11012037	0.83[ASN][1000 genomes]
rs12354582	0.83[ASN][1000 genomes]
rs12358385	0.84[ASN][1000 genomes]
rs12359337	0.83[ASN][1000 genomes]
rs12359445	0.89[ASN][1000 genomes]
rs16916742	0.83[ASN][1000 genomes]
rs16916744	0.83[ASN][1000 genomes]
rs16916745	0.83[ASN][1000 genomes]
rs16916765	0.89[ASN][1000 genomes]
rs17658718	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55691793	0.84[ASN][1000 genomes]
rs55910920	0.84[ASN][1000 genomes]
rs6482123	0.89[ASN][1000 genomes]
rs7096615	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18266800-18276400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:18268600-18271600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:18268600-18271800	Enhancers	Osteobl	bone
4	chr10:18269000-18271200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:18269600-18270600	Enhancers	NH-A	brain
6	chr10:18269600-18271000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18269600-18271600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:18269600-18271600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:18269600-18271800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:18269600-18271800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:18269600-18271800	Enhancers	NHDF-Ad	bronchial
12	chr10:18269800-18271400	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:18269800-18271800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:18269800-18271800	Enhancers	NHLF	lung
15	chr10:18270000-18271200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:18270000-18271200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:18270000-18271200	Enhancers	HSMM	muscle
18	chr10:18270000-18271600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:18270000-18271800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:18270200-18270600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:18270200-18270600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:18270200-18271000	Enhancers	Aorta	Aorta
23	chr10:18270200-18271200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:18270200-18271200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:18270200-18271400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:18270200-18271600	Enhancers	NHEK	skin
27	chr10:18270200-18271800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links