Variant report

Variant	rs11011929
Chromosome Location	chr10:18279756-18279757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10827920	1.00[AFR][1000 genomes]
rs11011589	1.00[AFR][1000 genomes]
rs11011622	1.00[AFR][1000 genomes]
rs11011721	1.00[AFR][1000 genomes]
rs11011850	0.88[AMR][1000 genomes]
rs11011896	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11011980	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012030	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012036	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012037	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12354582	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12359337	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12359445	0.84[EUR][1000 genomes]
rs16916742	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16916744	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17658718	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6482123	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv528116	chr10:18278063-18282427	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18273600-18282000	Weak transcription	Hela-S3	cervix
2	chr10:18276400-18280200	Enhancers	GM12878-XiMat	blood
3	chr10:18277400-18279800	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:18277800-18283000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:18278000-18280200	Enhancers	Primary B cells from cord blood	blood
6	chr10:18278400-18280400	Enhancers	NHDF-Ad	bronchial
7	chr10:18278800-18279800	Enhancers	NHLF	lung
8	chr10:18278800-18280000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:18278800-18280200	Enhancers	NHEK	skin
10	chr10:18279000-18280000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:18279000-18280000	Enhancers	Osteobl	bone
12	chr10:18279000-18280200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:18279200-18279800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:18279200-18279800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:18279200-18280000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:18279400-18280000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:18279600-18280000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:18279600-18280000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:18279600-18280000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:18279600-18280000	Enhancers	HSMM	muscle
21	chr10:18279600-18280000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links