Variant report

Variant	rs10829020
Chromosome Location	chr10:26827337-26827338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10764633	0.87[ASN][1000 genomes]
rs10829019	0.95[ASN][1000 genomes]
rs10829024	0.91[ASN][1000 genomes]
rs11015154	0.95[ASN][1000 genomes]
rs11015155	0.95[ASN][1000 genomes]
rs11015156	0.95[ASN][1000 genomes]
rs11015162	0.91[ASN][1000 genomes]
rs11015163	0.91[ASN][1000 genomes]
rs11015175	0.83[ASN][1000 genomes]
rs11597181	0.91[ASN][1000 genomes]
rs12354674	0.87[ASN][1000 genomes]
rs12355051	0.87[ASN][1000 genomes]
rs12357356	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67278705	0.91[ASN][1000 genomes]
rs7081291	0.87[ASN][1000 genomes]
rs7096704	0.87[ASN][1000 genomes]
rs7899859	0.86[ASN][1000 genomes]
rs7903201	0.95[ASN][1000 genomes]
rs7910019	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv523178	chr10:26823045-26828889	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780200-26834000	Strong transcription	Dnd41	blood
2	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
5	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:26809200-26831800	Weak transcription	Lung	lung
8	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
9	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:26809400-26828200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:26814400-26832600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:26815600-26832800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:26817800-26828800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr10:26818600-26832800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:26819600-26837000	Weak transcription	Right Atrium	heart
18	chr10:26820600-26833000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:26820600-26834400	Strong transcription	Thymus	Thymus
20	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
21	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:26824400-26828000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:26825400-26840800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:26826400-26830800	Weak transcription	Adipose Nuclei	Adipose
25	chr10:26826400-26831800	Weak transcription	Spleen	Spleen
26	chr10:26826600-26829800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:26826600-26830200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:26826600-26830800	Weak transcription	Liver	Liver
29	chr10:26826600-26831200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:26826600-26836000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:26826800-26828000	Weak transcription	GM12878-XiMat	blood
32	chr10:26826800-26828800	Weak transcription	Primary T cells from cord blood	blood
33	chr10:26826800-26828800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:26826800-26829400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:26826800-26829600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:26826800-26831000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:26827000-26828000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:26827000-26828200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:26827000-26830400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:26827200-26827600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:26827200-26828600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:26827200-26830800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:26827200-26839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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