Variant report

Variant	rs11015175
Chromosome Location	chr10:26846518-26846519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:26845626-26846603	SK-N-SH	brain:	n/a	chr10:26846546-26846553 chr10:26846182-26846201
2	RAD21	chr10:26845748-26846573	A549	lung:	n/a	chr10:26846546-26846553 chr10:26846182-26846201
3	RAD21	chr10:26845797-26846566	HCT-116	colon:	n/a	chr10:26846546-26846553 chr10:26846182-26846201
4	SMC3	chr10:26845747-26846639	SK-N-SH	brain:	n/a	chr10:26846186-26846200
5	CTCF	chr10:26845747-26846552	SK-N-SH	brain:	n/a	chr10:26846179-26846200 chr10:26846184-26846202
6	CTCF	chr10:26845550-26846821	A549	lung:	n/a	chr10:26846179-26846200 chr10:26846184-26846202
7	POLR2A	chr10:26844606-26847044	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:26624036..26626076-chr10:26845372..26847164,2	K562	blood:
2	chr10:26164613..26165150-chr10:26845776..26846594,2	MCF-7	breast:
3	chr10:26623757..26624604-chr10:26845727..26846633,5	K562	blood:
4	chr10:26623750..26624793-chr10:26845722..26846732,9	MCF-7	breast:

Variant related genes	Relation type
APBB1IP	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10764633	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829019	0.82[CEU][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829020	0.83[ASN][1000 genomes]
rs10829024	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015154	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015155	0.80[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015156	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015160	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015161	0.84[CEU][hapmap]
rs11015162	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11015163	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11597181	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11814909	0.88[AFR][1000 genomes]
rs11816179	0.81[AFR][1000 genomes]
rs12354674	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12355051	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12357356	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs67278705	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7081291	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7096433	0.83[CEU][hapmap]
rs7096704	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766676	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7899859	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7903201	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7904192	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7910019	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7910933	1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26834800-26858400	Strong transcription	Dnd41	blood
3	chr10:26839200-26847000	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood
5	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:26840000-26850600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:26840200-26855200	Weak transcription	Placenta	Placenta
10	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:26840400-26849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:26843200-26849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:26843200-26849000	Weak transcription	Spleen	Spleen
14	chr10:26843200-26849600	Weak transcription	Lung	lung
15	chr10:26844200-26847000	Enhancers	Liver	Liver
16	chr10:26844400-26846600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:26844600-26846600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:26844600-26846600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:26844600-26846800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:26844600-26847000	Enhancers	Adipose Nuclei	Adipose
21	chr10:26844600-26849000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:26844800-26847000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:26845000-26846600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr10:26845000-26846800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr10:26845000-26855600	Weak transcription	Esophagus	oesophagus
26	chr10:26845200-26846600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:26845200-26849000	Weak transcription	Pancreas	Pancrea
28	chr10:26845200-26853600	Strong transcription	Thymus	Thymus
29	chr10:26845400-26846600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:26845400-26846800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:26845400-26846800	Enhancers	Brain Hippocampus Middle	brain
32	chr10:26845400-26846800	Enhancers	Hela-S3	cervix
33	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:26845600-26846800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:26845800-26847200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:26846000-26846600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:26846000-26848200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:26846000-26854000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
40	chr10:26846200-26846600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:26846200-26846800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:26846200-26846800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
43	chr10:26846200-26847000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:26846200-26847000	Active TSS	Duodenum Mucosa	Duodenum
45	chr10:26846200-26847000	Flanking Active TSS	A549	lung
46	chr10:26846200-26847000	Active TSS	NH-A	brain
47	chr10:26846200-26847000	Flanking Active TSS	Osteobl	bone
48	chr10:26846200-26847200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:26846200-26859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:26846400-26846600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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