Variant report

Variant	rs7910933
Chromosome Location	chr10:26805655-26805656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10829019	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs10829024	0.88[AFR][1000 genomes]
rs11015154	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11015155	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11015156	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11015160	0.83[YRI][hapmap]
rs11015162	0.84[AFR][1000 genomes]
rs11015163	0.84[AFR][1000 genomes]
rs11015175	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11597181	0.88[AFR][1000 genomes]
rs11814909	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11816179	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12355051	0.88[AFR][1000 genomes]
rs12357356	1.00[CHB][hapmap]
rs1775245	1.00[CHB][hapmap]
rs2479882	1.00[ASN][1000 genomes]
rs7081291	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs766676	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs787068	0.83[CEU][hapmap]
rs7899859	0.81[AFR][1000 genomes]
rs7903201	0.82[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7904192	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7910019	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3396227	chr10:26805614-26805834	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:26780200-26834000	Strong transcription	Dnd41	blood
3	chr10:26780400-26805800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:26781200-26808000	Strong transcription	Primary B cells from cord blood	blood
9	chr10:26784400-26808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
13	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
14	chr10:26797400-26811400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:26800000-26812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:26801600-26813400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:26801800-26819000	Strong transcription	Thymus	Thymus
19	chr10:26802200-26805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:26802200-26806400	Weak transcription	Lung	lung
21	chr10:26802200-26807400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:26802200-26808000	Strong transcription	Liver	Liver
23	chr10:26802200-26808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:26802200-26808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:26802200-26808200	Weak transcription	Pancreas	Pancrea
26	chr10:26802200-26808400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr10:26802200-26808800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
29	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:26802400-26818600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:26802800-26815800	Strong transcription	GM12878-XiMat	blood
34	chr10:26803400-26808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:26803800-26807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:26804000-26817600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:26804400-26807200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:26804800-26806200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:26805000-26806400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:26805200-26806000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:26805200-26806000	Enhancers	Right Atrium	heart
42	chr10:26805200-26808600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:26805400-26806800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:26805400-26807000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr10:26805600-26805800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr10:26805600-26806000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr10:26805600-26806000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr10:26805600-26806000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr10:26805600-26806000	Enhancers	Fetal Intestine Small	intestine
50	chr10:26805600-26806200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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