Variant report

Variant	rs11015160
Chromosome Location	chr10:26829338-26829339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741112	0.81[MKK][hapmap]
rs10764633	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829019	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10829024	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015154	0.87[ASW][hapmap];0.83[CEU][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11015155	0.83[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11015156	0.87[ASW][hapmap];0.83[CEU][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11015161	0.87[CEU][hapmap]
rs11015175	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11597181	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12354674	1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12355051	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7081291	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7096433	0.83[CEU][hapmap]
rs7096704	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs766676	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs7899859	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7903201	0.87[ASW][hapmap];0.83[CEU][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7904192	0.83[YRI][hapmap]
rs7910019	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7910933	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11015160	ARMC3	cis	cerebellum	SCAN
rs11015160	PRTFDC1	cis	cerebellum	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780200-26834000	Strong transcription	Dnd41	blood
2	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
5	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:26809200-26831800	Weak transcription	Lung	lung
8	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
9	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:26814400-26832600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:26815600-26832800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:26818600-26832800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:26819600-26837000	Weak transcription	Right Atrium	heart
16	chr10:26820600-26833000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:26820600-26834400	Strong transcription	Thymus	Thymus
18	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
19	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:26825400-26840800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:26826400-26830800	Weak transcription	Adipose Nuclei	Adipose
22	chr10:26826400-26831800	Weak transcription	Spleen	Spleen
23	chr10:26826600-26829800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:26826600-26830200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:26826600-26830800	Weak transcription	Liver	Liver
26	chr10:26826600-26831200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:26826600-26836000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:26826800-26829400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:26826800-26829600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:26826800-26831000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:26827000-26830400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:26827200-26830800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:26827200-26839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:26827600-26833200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:26828000-26829600	Enhancers	GM12878-XiMat	blood
36	chr10:26828000-26836800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:26828200-26829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:26828600-26831000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:26828600-26833000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:26828800-26829400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:26828800-26830000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:26828800-26835600	Strong transcription	Primary T cells from cord blood	blood
43	chr10:26829000-26829600	Enhancers	Brain Germinal Matrix	brain
44	chr10:26829000-26833400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:26829200-26829400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr10:26829200-26830000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:26829200-26830000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:26829200-26830000	Genic enhancers	Primary B cells from peripheral blood	blood

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